BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_H04_O07ZS5.seq
         (906 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MTH763 MTH763  COG1107 [L] Archaea-specific RecJ-like exonucleas...    30  5.7
L73435 L73435  COG1113 [E] Gamma-aminobutyrate permease and rela...    30  7.5

>MTH763 MTH763  COG1107 [L] Archaea-specific RecJ-like exonuclease,
           contains DnaJ-type Z
          Length = 729

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 750 RFTTPRPGKNPGFININPLEEHHSLSPLGVFRKGP 854
           RFT P PGK  GF++   +++H   +P+     GP
Sbjct: 626 RFTFPAPGKTCGFVHDYMVQKHGEDTPIITLAYGP 660



>L73435 L73435  COG1113 [E] Gamma-aminobutyrate permease and related
           permeases
          Length = 449

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 381 LSCTACSTIYYCTRKFYYLLVLYPAPQVLLSTSTIYIMHVLTSPCTL*FLACVLCKIT 554
           L   A   +Y+  ++     V      VL++ + I+IM ++T+P TL   A V+C ++
Sbjct: 383 LLLVAALVLYFKHKEVTNWFVKLATLVVLIALTIIFIMQIVTNPWTLSVFALVICLLS 440



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38697888
Number of Sequences: 78847
Number of extensions: 732733
Number of successful extensions: 1582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of query: 302
length of database: 26,228,252
effective HSP length: 49
effective length of query: 252
effective length of database: 22,364,749
effective search space: 5635916748
effective search space used: 5635916748
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)