BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_H07_O13ZS5.seq
         (909 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HI1142 HI1142  COG0849 [D] Predicted ATPases of the HSP70 class ...    32  2.0
MJ0514B MJ0514b  COG1145 [C] Ferredoxin 2                              30  4.4
PAB1297 PAB1297  COG1721 [S] Uncharacterized ACR                       30  7.5
YPL183C YPL183c  COG2319 [R] WD40 repeat protein                       29  9.8

>HI1142 HI1142  COG0849 [D] Predicted ATPases of the HSP70 class
           involved in cell divisi
          Length = 425

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 191 LSLESLQLKTFVHLIFCHEPFQPNVNSSLQQ 99
           L L+ ++LK  VHLI CH+ +Q N+  ++++
Sbjct: 147 LGLQGVRLKAQVHLIACHQDWQNNLKKAVER 177



>MJ0514B MJ0514b  COG1145 [C] Ferredoxin 2
          Length = 163

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 272 QIDPNNGIVVSRFKCELGETAKCIQIAK 355
           ++ P N IV+ R +CE+ E A+ I++ K
Sbjct: 78  KVCPTNAIVIIRLRCEINEDARIIEVDK 105



>PAB1297 PAB1297  COG1721 [S] Uncharacterized ACR
          Length = 411

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 5/63 (7%)
 Frame = -2

Query: 176 LQLKTFVHLIFCHEPFQPNVNSSL--QQIA---GRWGNPQKILESHGTRV*MXLERDRXR 12
           L L  F++L +    F P++ SSL  ++I+   G+ G+ +  LE+ G+ V +  +  R R
Sbjct: 29  LSLSIFMYLYYSRMSFNPDIRSSLLVKRISLEEGKVGSVKISLENRGSPVYVNFKYQRIR 88

Query: 11  TER 3
            ER
Sbjct: 89  LER 91



>YPL183C YPL183c  COG2319 [R] WD40 repeat protein
          Length = 1013

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/54 (31%), Positives = 25/54 (45%)
 Frame = -1

Query: 360  QIFAIWMHLAVSPSSHLNRETTIPLLGSIWTISEEHDAPVKPVLMTNSVLLSLW 199
            Q+   W   A   S    + TT+   GS+  IS + DA  +  L+   V LS+W
Sbjct: 958  QVIRAWEITAGKLSLVDKKRTTVADTGSLEIISNDEDADSEKTLLIGGVGLSIW 1011



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36703053
Number of Sequences: 78847
Number of extensions: 689381
Number of successful extensions: 1622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)