BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_H10_O19ZS5.seq
         (954 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UU415 UU415  COG0587 [L] DNA polymerase III alpha subunit              30  6.1

>UU415 UU415  COG0587 [L] DNA polymerase III alpha subunit
          Length = 969

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
 Frame = +2

Query: 413 FLSCCPLPWSHFLQFTLSPSFLSPPAF-NLSLIFPSVLIAFH 535
           F +CC    +HFL   L+ SF SP A  NL+ +   + +  H
Sbjct: 167 FKNCCDFDNNHFLNDNLAQSFFSPIALNNLNKVLNELKVQIH 208



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28052126
Number of Sequences: 78847
Number of extensions: 505657
Number of successful extensions: 1363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of query: 318
length of database: 26,228,252
effective HSP length: 49
effective length of query: 268
effective length of database: 22,364,749
effective search space: 5993752732
effective search space used: 5993752732
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)