BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_H12_O23ZS5.seq
         (928 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MLL2069 mll2069  COG2319 [R] WD40 repeat protein                       35  0.24
BS_YVRK BS_yvrK  COG2140 [G] Thermophilic glucose-6-phosphate is...    34  0.41
PM1080 PM1080  COG1120 [P] ABC-type cobalamin/Fe3+-siderophores ...    32  1.5
MJ0791 MJ0791  COG0165 [E] Argininosuccinate lyase                     30  4.5

>MLL2069 mll2069  COG2319 [R] WD40 repeat protein
          Length = 586

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 206 CDHNLSVNIDDPSRADI-YNPRAGTITRLNSQTFPILNIVQMSATRVHLY 352
           CDHNL ++   PS A + + PR  T+TRL  +   +L +   +A  VHLY
Sbjct: 36  CDHNLPISTPMPSPAGLPHEPR--TMTRLADRLLAVLLMALAAACLVHLY 83



>BS_YVRK BS_yvrK  COG2140 [G] Thermophilic glucose-6-phosphate
           isomerase and related meta
          Length = 385

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 27/117 (23%), Positives = 52/117 (44%)
 Frame = +2

Query: 326 MSATRVHLYQNAIISPLWNINAHSVMYMIQGHIWVQVVNDHGRNVFNDLLSPGQLLIIPQ 505
           +++  + L   AI    W+  A    YMI G   V +V++ GR+  +D +  G L   P 
Sbjct: 79  LASVNMRLKPGAIRELHWHKEAEWA-YMIYGSARVTIVDEKGRSFIDD-VGEGDLWYFPS 136

Query: 506 NYVVLKKAQRDGSKYIEFKTNANSMVSHIAGKNSILGALPVDVIANAYGISRTEARN 676
                 +A  +G++++    + +   +        L   P +VIA  +G+++ E  N
Sbjct: 137 GLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISN 193



>PM1080 PM1080  COG1120 [P] ABC-type cobalamin/Fe3+-siderophores
           transport systems, ATPa
          Length = 245

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 239 DRRCSHLDYDHKSSPLNHSNHHKLIVMHEIALHEVDIPDMALPEIVLLE 93
           D  C+HLD  H+ S +     HK      + LH++D+       I+L++
Sbjct: 157 DEPCNHLDIRHQQSLMQFLKQHKTQFNAVMVLHDLDLAASYADHIILMQ 205



>MJ0791 MJ0791  COG0165 [E] Argininosuccinate lyase
          Length = 484

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 20/69 (28%), Positives = 37/69 (52%), Gaps = 5/69 (7%)
 Frame = -1

Query: 592 DVTNHGVRISLEFNVLASITLCLLQNNIVLWYD**LPR--AKKVIEHISTMV---IDNLN 428
           DV  +   +S +  +  +  LC + + I+L+    + +  AKK+IE +  +    ++NLN
Sbjct: 16  DVAKYTTSLSFDKEIFEADILCDIAHVIMLYEQGIIKKEDAKKIIEGLKEIYKKGMENLN 75

Query: 427 PDMSLDHVH 401
            D SLD +H
Sbjct: 76  LDPSLDDIH 84



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39552097
Number of Sequences: 78847
Number of extensions: 798279
Number of successful extensions: 2154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of query: 309
length of database: 26,228,252
effective HSP length: 49
effective length of query: 259
effective length of database: 22,364,749
effective search space: 5792469991
effective search space used: 5792469991
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)