BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/1605_A04_A07ZS5.seq
         (1081 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DR1893 DR1893  COG0652 [O] Peptidyl-prolyl cis-trans isomerase (...    33  1.1
CC3441 CC3441  COG0596 [R] Predicted hydrolases or acyltransfera...    33  1.1
VNG0159G VNG0159G  COG0323 [L] DNA mismatch repair enzyme (predi...    32  1.4
DRA0212 DRA0212  COG2377 [S] Uncharacterized BCR                       30  5.4
ZPROQM ZproQm  COG3109 [T] Activator of osmoprotectant transport...    30  9.2

>DR1893 DR1893  COG0652 [O] Peptidyl-prolyl cis-trans isomerase
           (rotamase) - cyclophilin
          Length = 350

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -3

Query: 602 PGTVRRLSGSDXLLSGVRDERMARGATSTTAARDARPGNTLHARQTSQTRGRAARGEKTN 423
           PG V  ++G+            A   ++TTA     PG T  A  T QT        +T 
Sbjct: 71  PGIVAEVNGA------------APATSTTTAVTTTTPGTTTAATTTEQTTMTTV--TETP 116

Query: 422 ASPPAGKPQPATPAA 378
           A+P A  P PAT A+
Sbjct: 117 AAPAAATPAPATSAS 131



>CC3441 CC3441  COG0596 [R] Predicted hydrolases or acyltransferases
           (alpha/beta hydrola
          Length = 438

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 34/143 (23%), Positives = 52/143 (35%), Gaps = 11/143 (7%)
 Frame = -3

Query: 536 ARGATSTTAARDARPGNTLHARQTSQTRGRAARGEKTNA-SPPAGKPQPATPAADQERDG 360
           A+ A       DA+P  T  A    +   +A       A +  A  P+   PAA +    
Sbjct: 305 AKAAPKAAPKADAKPKATAKAPVAKKAAPKAKAAPAAEAPAKSAAAPKAKAPAAPKAAAA 364

Query: 359 AAEGX**CRRGKRRASSSFRPRTTRQRPKSGTTPAKKKFAPRKTKSH---------SPIR 207
           A            +  +  +P+T  + P + T PA KK A  K  +          +P  
Sbjct: 365 A------------KPKAEAKPKTAAKAPAAETAPAAKKPAAPKAAAKPAAKTATKAAPAA 412

Query: 206 KRG*SGRTGK-PAVTAPPKERPR 141
           K   + +  K PA  AP K  P+
Sbjct: 413 KAPAAPKAAKAPATKAPAKSSPK 435



>VNG0159G VNG0159G  COG0323 [L] DNA mismatch repair enzyme
           (predicted ATPase)
          Length = 659

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
 Frame = -3

Query: 560 SGVRDERMARGATSTTAARDA-RPGNTLHARQTSQT---RGRAARGEKTNASPPAGKPQP 393
           +GVRD  +  G     A R A +PG+   + + S T    G A  G+    S   G+   
Sbjct: 323 AGVRDALLDAGLVRAGAPRGASKPGDAEISPEHSPTDRDAGAAGGGDAAGQSDGNGQRTA 382

Query: 392 ATPAADQERDGAAEGX**CRRGKRRASSSFRPRTTRQRPKSGTTPAKKKF 243
           A+ A  +    A E       G   A S+     TR+RP SGT     +F
Sbjct: 383 ASGATSESPASAFETG----GGDEAADSAASTDGTRERPGSGTESRTGRF 428



>DRA0212 DRA0212  COG2377 [S] Uncharacterized BCR
          Length = 582

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
 Frame = -3

Query: 338 CRRGKRRASSSFRPRTTRQRPKSGTTPAKKKFAPRKT-----KSHSPIRKRG*SGRTGKP 174
           CR G  +     R RTT +    G         P +T     +SH   R RG   R    
Sbjct: 495 CRAGGPKLR---RGRTTGRAGPRGRRDVGALAGPPRTGRAAAQSH---RARGVDARAVAS 548

Query: 173 AVTAPPKERPRPHHTHAGGNHGSADTAPSPHP 78
           A + PP ERPR H   A         A SP P
Sbjct: 549 ADSRPPSERPRRHRDPADRPQRGRGAALSPWP 580



>ZPROQM ZproQm  COG3109 [T] Activator of osmoprotectant transporter
           ProP
          Length = 232

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 27/107 (25%), Positives = 41/107 (38%)
 Frame = -3

Query: 557 GVRDERMARGATSTTAARDARPGNTLHARQTSQTRGRAARGEKTNASPPAGKPQPATPAA 378
           G  DE+    A        AR       +Q  +    AA GEK +A     KP+P TP  
Sbjct: 89  GELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTP-- 146

Query: 377 DQERDGAAEGX**CRRGKRRASSSFRPRTTRQRPKSGTTPAKKKFAP 237
            + ++GA          K RA      +   + PK+   P +++  P
Sbjct: 147 -RRKEGAER--------KPRAQ-----KPVEKAPKTAKAPREEQHTP 179



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43088900
Number of Sequences: 78847
Number of extensions: 843756
Number of successful extensions: 2481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of query: 360
length of database: 26,228,252
effective HSP length: 49
effective length of query: 310
effective length of database: 22,364,749
effective search space: 6933072190
effective search space used: 6933072190
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)