BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/1605_B05_C09ZS5.seq
(1011 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDA8312 CDa8312 COG0039 [C] Malate/lactate dehydrogenases 156 6e-38
YKL085W YKL085w COG0039 [C] Malate/lactate dehydrogenases 143 4e-34
CDA7901 CDa7901 COG0039 [C] Malate/lactate dehydrogenases 142 7e-34
CDA8733 CDa8733 COG0039 [C] Malate/lactate dehydrogenases 139 6e-33
YDL078C YDL078c COG0039 [C] Malate/lactate dehydrogenases 129 1e-29
MDH mdh COG0039 [C] Malate/lactate dehydrogenases 123 4e-28
ZMDH Zmdh COG0039 [C] Malate/lactate dehydrogenases 123 4e-28
VC0432 VC0432 COG0039 [C] Malate/lactate dehydrogenases 119 8e-27
YOL126C YOL126c COG0039 [C] Malate/lactate dehydrogenases 108 1e-23
HI1210 HI1210 COG0039 [C] Malate/lactate dehydrogenases 108 1e-23
PM0550 PM0550 COG0039 [C] Malate/lactate dehydrogenases 105 9e-23
BH3158 BH3158 COG0039 [C] Malate/lactate dehydrogenases 60 4e-09
CC3655 CC3655 COG0039 [C] Malate/lactate dehydrogenases 58 3e-08
BS_CITH BS_citH COG0039 [C] Malate/lactate dehydrogenases 56 8e-08
AQ_1782 aq_1782 COG0039 [C] Malate/lactate dehydrogenases 54 3e-07
TVN1097 TVN1097 COG0039 [C] Malate/lactate dehydrogenases 51 4e-06
MLL4308 mll4308 COG0039 [C] Malate/lactate dehydrogenases 46 9e-05
TA0952 Ta0952 COG0039 [C] Malate/lactate dehydrogenases 44 6e-04
RV1407 Rv1407 COG0144 [J] tRNA and rRNA cytosine-C5-methylases 34 0.34
PM1370 PM1370 COG0442 [J] Prolyl-tRNA synthetase 33 0.59
NMB0401_2 NMB0401_2 COG1012 [C] NAD-dependent aldehyde dehydrog... 31 2.9
MLL8741 mll8741 COG3547 [L] Transposase 30 5.0
YIDA yidA COG0561 [R] Predicted hydrolases of the HAD superfamily 30 6.5
YJL081C YJL081c COG1077 [D] HSP70 class molecular chaperones in... 30 6.5
TA0840 Ta0840 COG0464 [O] ATPases of the AAA+ class 30 6.5
TVN0947 TVN0947 COG0464 [O] ATPases of the AAA+ class 30 6.5
>CDA8312 CDa8312 COG0039 [C] Malate/lactate dehydrogenases
Length = 342
Score = 156 bits (394), Expect = 6e-38
Identities = 94/189 (49%), Positives = 121/189 (63%), Gaps = 10/189 (5%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELT--IPVIGGHSGETIVPLFSKASPSVQIPDDKY 236
FGVTTLD VRAETF+ E+T +P +L I VIGGHSG+TIVPL + + + D Y
Sbjct: 149 FGVTTLDSVRAETFLGELTN-TDPTKLKGKISVIGGHSGDTIVPLINYDAGVGVLSDSDY 207
Query: 237 DALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKG----EKGLVEPXYVY 404
V+R+QFGGDEVVKAK+GAGSATLSMAYAG+RFA+ V+ ++ G + + Y+Y
Sbjct: 208 KNFVHRVQFGGDEVVKAKNGAGSATLSMAYAGYRFADYVISSLTGGATPAGRIPDSSYIY 267
Query: 405 LPGVPGGEAIAKE--TGCNFFSVPIELGPNGAEKATNPFEGF--TDKEKALFANAPDGLK 572
LPGV GG+ + + G +FFSVP+ L NPFE T +EK L A GLK
Sbjct: 268 LPGVSGGKEFSAKYVDGVDFFSVPVVLSQGEIRSFVNPFEELTVTKEEKKLVEVALKGLK 327
Query: 573 GTITMVSFF 599
G+IT + F
Sbjct: 328 GSITQGTEF 336
>YKL085W YKL085w COG0039 [C] Malate/lactate dehydrogenases
Length = 334
Score = 143 bits (361), Expect = 4e-34
Identities = 80/173 (46%), Positives = 111/173 (63%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLD +RA F++E+ +P + + VIGGHSG TI+PL S+ + + + DDK
Sbjct: 162 FGVTTLDSIRAARFISEVEN-TDPTQERVNVIGGHSGITIIPLISQTNHKL-MSDDKRHE 219
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L++RIQFGGDEVVKAK+GAGSATLSMA+AG +FA VL KGE+ ++EP +V P
Sbjct: 220 LIHRIQFGGDEVVKAKNGAGSATLSMAHAGAKFANAVLSGFKGERDVIEPSFVDSP---- 275
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKGTI 581
+ K G FF+ P+ LGP+G EK +P + +E+ + + LK I
Sbjct: 276 ---LFKSEGIEFFASPVTLGPDGIEK-IHPIGELSSEEEEMLQKCKETLKKNI 324
>CDA7901 CDa7901 COG0039 [C] Malate/lactate dehydrogenases
Length = 332
Score = 142 bits (359), Expect = 7e-34
Identities = 84/169 (49%), Positives = 107/169 (62%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLD++RA FV+E+ G NP +PV+GGHSG TIVPL S+ + + DA
Sbjct: 159 FGVTTLDVLRAARFVSEVAG-TNPVNENVPVVGGHSGVTIVPLLSQTKHK-DLSGETRDA 216
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
LV+RIQFGGDEVV+AKDGAGSATLSMA AG RFA VL + GEK ++E +V P
Sbjct: 217 LVHRIQFGGDEVVQAKDGAGSATLSMAQAGARFAGAVLDGLAGEKDVIECTFVDSP---- 272
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGL 569
+ K+ G +FFS + LG +G K +P +D E+A A D L
Sbjct: 273 ---LFKDEGVDFFSTKVTLGVDGV-KTVHPIGEISDYEEAQVKEAKDTL 317
>CDA8733 CDa8733 COG0039 [C] Malate/lactate dehydrogenases
Length = 337
Score = 139 bits (351), Expect = 6e-33
Identities = 81/180 (45%), Positives = 115/180 (63%), Gaps = 7/180 (3%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEI-TGKANPQELTIPVIGGHSGETIVPLFSKASPSVQ---IPDD 230
FGVTTLDIVRA TF++++ + P + I V+GGHSGETIVPL+S + + ++
Sbjct: 149 FGVTTLDIVRANTFISQLFLDQTKPSDFNINVVGGHSGETIVPLYSLGNSKQYYDILSEE 208
Query: 231 KYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLP 410
+ L+ R+QFGGDEVV+AK+GAGSATLSMAYAG+R AE +L AV G+ +VE ++ L
Sbjct: 209 QKKELIKRVQFGGDEVVQAKNGAGSATLSMAYAGYRLAESILAAVNGKTDIVECTFLNLD 268
Query: 411 GVPGGEAIAKE--TGCNFFSVPIELGPNG-AEKATNPFEGFTDKEKALFANAPDGLKGTI 581
G + A++ +FFS+P++LG NG E + +D EK L A + L+ I
Sbjct: 269 SSIKGASEARKLVKDLDFFSLPVQLGKNGITEVKYDILNQISDDEKKLLEVAIEQLQKNI 328
>YDL078C YDL078c COG0039 [C] Malate/lactate dehydrogenases
Length = 343
Score = 129 bits (323), Expect = 1e-29
Identities = 84/189 (44%), Positives = 116/189 (60%), Gaps = 17/189 (8%)
Frame = +3
Query: 66 GVTTLDIVRAETFVAEITGKANP-----QELT-----IPVIGGHSGETIVPLFSKASPSV 215
GVT LD+VRAETF+ + NP Q+ T + VIGGHSGETI+P+ + S
Sbjct: 144 GVTNLDLVRAETFLVDYLMLKNPKIGQEQDKTTMHRKVTVIGGHSGETIIPIITDKSLVF 203
Query: 216 QIPDDKYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVE-- 389
Q+ D +Y+ ++R+QFGGDE+VKAK GAGSATLSMA+AG +FAE+VLR+ EK E
Sbjct: 204 QL-DKQYEHFIHRVQFGGDEIVKAKQGAGSATLSMAFAGAKFAEEVLRSFHNEKPETESL 262
Query: 390 PXYVYLPGVPGGEAIAKETGCN---FFSVPIELGPNGAEKA--TNPFEGFTDKEKALFAN 554
+VYLPG+ G+ + G N +FS+PI L NG+ + T+ E + +E+ L
Sbjct: 263 SAFVYLPGLKNGKKAQQLVGDNSIEYFSLPIVL-RNGSVVSIDTSVLEKLSPREEQLVNT 321
Query: 555 APDGLKGTI 581
A L+ I
Sbjct: 322 AVKELRKNI 330
>MDH mdh COG0039 [C] Malate/lactate dehydrogenases
Length = 312
Score = 123 bits (309), Expect = 4e-28
Identities = 73/146 (50%), Positives = 91/146 (62%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLDI+R+ TFVAE+ GK P E+ +PVIGGHSG TI+PL S+ P V + +
Sbjct: 144 FGVTTLDIIRSNTFVAELKGK-QPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVAD 201
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L RIQ G EVV+AK G GSATLSM A RF ++RA++GE+G+VE YV G
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG--- 258
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEK 500
FFS P+ LG NG E+
Sbjct: 259 -------QYARFFSQPLLLGKNGVEE 277
>ZMDH Zmdh COG0039 [C] Malate/lactate dehydrogenases
Length = 312
Score = 123 bits (309), Expect = 4e-28
Identities = 73/146 (50%), Positives = 91/146 (62%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLDI+R+ TFVAE+ GK P E+ +PVIGGHSG TI+PL S+ P V + +
Sbjct: 144 FGVTTLDIIRSNTFVAELKGK-QPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVAD 201
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L RIQ G EVV+AK G GSATLSM A RF ++RA++GE+G+VE YV G
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG--- 258
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEK 500
FFS P+ LG NG E+
Sbjct: 259 -------QYARFFSQPLLLGKNGVEE 277
>VC0432 VC0432 COG0039 [C] Malate/lactate dehydrogenases
Length = 353
Score = 119 bits (298), Expect = 8e-27
Identities = 79/173 (45%), Positives = 103/173 (58%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLD++R+ETFVA + K +P ++ +PVIGGHSG TI+PL S+ V D++ A
Sbjct: 186 FGVTTLDVIRSETFVAALKDK-DPGQVRVPVIGGHSGVTILPLLSQVE-GVSFTDEEVAA 243
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L RIQ G EVV+AK G GSATLSM A RF +++A++GE +VE Y Y+ G
Sbjct: 244 LTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGESDVVE--YAYVEG--E 299
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKGTI 581
GE FF+ PI+LG NG E A + E+A D LKG I
Sbjct: 300 GEY------APFFAQPIKLGKNGVE-ALLDIGKLSAYEQAALDGMLDTLKGDI 345
>YOL126C YOL126c COG0039 [C] Malate/lactate dehydrogenases
Length = 423
Score = 108 bits (271), Expect = 1e-23
Identities = 63/156 (40%), Positives = 94/156 (59%), Gaps = 14/156 (8%)
Frame = +3
Query: 66 GVTTLDIVRAETFVAEI------TGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPD 227
GVT LDIVRA TF+ EI T + N +PVIGGHSGETI+PLFS+++ ++ +
Sbjct: 223 GVTKLDIVRASTFLREINIESGLTPRVNSMP-DVPVIGGHSGETIIPLFSQSNFLSRLNE 281
Query: 228 DKYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVY- 404
D+ L++R+Q+GGDEVVKAK+G GSATLSMA+AG++ + + + G + Y
Sbjct: 282 DQLKYLIHRVQYGGDEVVKAKNGKGSATLSMAHAGYKCVVQFVSLLLGNIEQIHGTYYVP 341
Query: 405 ------LPGVPGGEAIAK-ETGCNFFSVPIELGPNG 491
P PG + + G ++F++P+ + G
Sbjct: 342 LKDANNFPIAPGADQLLPLVDGADYFAIPLTITTKG 377
>HI1210 HI1210 COG0039 [C] Malate/lactate dehydrogenases
Length = 311
Score = 108 bits (271), Expect = 1e-23
Identities = 67/146 (45%), Positives = 88/146 (59%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLD++R+ETFVAE+ G N ++PVIGGHSG TI+PL S+ + + +D+ +
Sbjct: 144 FGVTTLDVLRSETFVAELKG-LNVSRTSVPVIGGHSGVTILPLLSQVQYA-KWNEDEIEP 201
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L RIQ G EV+ AK G GSATLSMA A RFA +++ + GE +VE YV G
Sbjct: 202 LTKRIQNAGTEVLNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDG--- 257
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEK 500
FFS P+ LG G E+
Sbjct: 258 -------KYARFFSQPVRLGKEGVEE 276
>PM0550 PM0550 COG0039 [C] Malate/lactate dehydrogenases
Length = 311
Score = 105 bits (263), Expect = 9e-23
Identities = 67/146 (45%), Positives = 86/146 (58%)
Frame = +3
Query: 63 FGVTTLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIPDDKYDA 242
FGVTTLDI+R+ETFV+E+ P T+PVIGGHSG TI+PL S+ + + D +
Sbjct: 144 FGVTTLDIIRSETFVSELKN-LEPARTTVPVIGGHSGVTILPLLSQVQYA-EWNDAEIAP 201
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
L RIQ G EVV+AK G GSATLSMA A RFA +++ + GE +VE YV G
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFALSLVKGLNGE-NVVECTYVEGDG--- 257
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEK 500
FF+ P+ LG G E+
Sbjct: 258 -------KYARFFAQPVRLGKEGVEE 276
>BH3158 BH3158 COG0039 [C] Malate/lactate dehydrogenases
Length = 314
Score = 60.5 bits (145), Expect = 4e-09
Identities = 56/174 (32%), Positives = 87/174 (49%), Gaps = 5/174 (2%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPL----FSKASPSVQI-PDDKYDA 242
LD R TFVA+ + +++T V+GGH G+ +VPL ++ P ++ P ++ DA
Sbjct: 152 LDTARFRTFVAQELN-LSVEDITGFVLGGH-GDDMVPLIRYSYAGGIPLEKLLPQERIDA 209
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
+V R + GG E+V G GSA YA +++ A+ +K V P YL G G
Sbjct: 210 IVERTRKGGGEIVGLL-GNGSA----YYAPAASLAEMVEAILKDKKRVLPTIAYLEGEYG 264
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKGTIT 584
E I + VP LG +G EK TD+EKA FA + + ++ ++
Sbjct: 265 YEDI-------YVGVPTILGGDGIEKVIE--LDLTDEEKATFAKSIESVRNVMS 309
>CC3655 CC3655 COG0039 [C] Malate/lactate dehydrogenases
Length = 320
Score = 57.8 bits (138), Expect = 3e-08
Identities = 56/176 (31%), Positives = 85/176 (47%), Gaps = 10/176 (5%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPS-VQIPD--------- 227
LD R F+AE TG + +++ +GGH G+ +VP+ ++ + +P+
Sbjct: 148 LDSARFAYFLAEATG-VSVEDIHAWTLGGH-GDDMVPMVRHSTVGGLPLPELVKQGWLSQ 205
Query: 228 DKYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYL 407
DK DA+V R + GG E+V A GSA + A + A L+ +K V P YL
Sbjct: 206 DKLDAIVERTRKGGGEIV-ALLKTGSAFYAPAESAIAMATSYLK----DKKRVLPCATYL 260
Query: 408 PGVPGGEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKG 575
G G + + VP+ +G GAEK FE D EKA+FA + + +KG
Sbjct: 261 TGQYGLNDL-------YVGVPVVIGAGGAEKIVE-FE-TNDDEKAMFAKSVESVKG 307
>BS_CITH BS_citH COG0039 [C] Malate/lactate dehydrogenases
Length = 312
Score = 56.2 bits (134), Expect = 8e-08
Identities = 55/177 (31%), Positives = 85/177 (47%), Gaps = 5/177 (2%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPL----FSKASP-SVQIPDDKYDA 242
LD R TFVAE + +++T V+GGH G+ +VPL ++ P IP ++ DA
Sbjct: 152 LDTARFRTFVAEELN-LSVKDVTGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERIDA 209
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
+V R + GG E+V G GSA YA +++ A+ ++ V P YL G G
Sbjct: 210 IVERTRKGGGEIVNLL-GNGSA----YYAPAASLTEMVEAILKDQRRVLPTIAYLEGEYG 264
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKGTITMVS 593
E I + VP +G NG E+ TD E+A + + +K + ++S
Sbjct: 265 YEGI-------YLGVPTIVGGNGLEQIIE--LELTDYERAQLNKSVESVKNVMKVLS 312
>AQ_1782 aq_1782 COG0039 [C] Malate/lactate dehydrogenases
Length = 335
Score = 54.3 bits (129), Expect = 3e-07
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSV-----QIPDDKYDA 242
LD R +TF++E +P+++ VIGGH G+ +VPL S ++ +P +K +
Sbjct: 162 LDSARFKTFISEEL-MVSPKDIHAYVIGGH-GDEMVPLISISNVGGIPLKDLLPKEKLEK 219
Query: 243 LVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVPG 422
++ R +FGG E+V S YA ++ A+ + P VYL G
Sbjct: 220 IIERTRFGGGEIVNLMG------TSAYYAPAAAIVDMIEALVQNSKRILPCSVYLDG-EA 272
Query: 423 GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEKALFANAPDGLKGTI 581
GE + C VP++LG NG E+ ++E+ ++ + + +K T+
Sbjct: 273 GEYYGVQGFC--VGVPVKLGSNGVEEIIK--VPMIEEEREMWRRSVESVKKTV 321
>TVN1097 TVN1097 COG0039 [C] Malate/lactate dehydrogenases
Length = 325
Score = 50.8 bits (120), Expect = 4e-06
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Frame = +3
Query: 75 TLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPS-----VQIPDDKYD 239
+LD R TF+A+ + +++ VIGGH G+ +VP +S + +P +K D
Sbjct: 152 SLDSSRFRTFLAKELD-VSVEDVNAFVIGGH-GDDMVPFIRYSSVAGIPIEKLLPKEKID 209
Query: 240 ALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGVP 419
A+V R +FGG E+V AGSA + + E V++ +K V P Y+ G
Sbjct: 210 AIVKRTRFGGGEIVNYLK-AGSAYYAPGISITAMVESVIK----DKKRVIPCAAYITG-- 262
Query: 420 GGEAIAKETGCN--FFSVPIELGPNGAEK 500
A+ G N F VPI++G G E+
Sbjct: 263 ---KHAEHYGINNKFIGVPIKIGERGVEE 288
>MLL4308 mll4308 COG0039 [C] Malate/lactate dehydrogenases
Length = 322
Score = 46.2 bits (108), Expect = 9e-05
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPS-VQIPD--------- 227
LD R F+AE K + +++T V+GGH G+++VP+ ++ S + +PD
Sbjct: 148 LDSARFRYFLAE-EFKVSVEDVTAFVLGGH-GDSMVPMIRYSTVSGIPLPDLVKMGWTSK 205
Query: 228 DKYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYL 407
+K D +V R + GG E+V GSA + A + AE L+ +K V P +L
Sbjct: 206 EKLDQIVQRTRDGGAEIVGLLK-TGSAYYAPAASAIAMAESYLK----DKKRVLPCAAHL 260
Query: 408 PGVPGGEAIAKETGCNFFSVPIELGPNGAEK 500
G G + + VP+ +G G E+
Sbjct: 261 SGQYGVKG-------TYVGVPVVIGAGGVER 284
>TA0952 Ta0952 COG0039 [C] Malate/lactate dehydrogenases
Length = 325
Score = 43.5 bits (101), Expect = 6e-04
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = +3
Query: 75 TLDIVRAETFVAEITGKANPQELTIPVIGGHSGETIVPLFSKASPSVQIP------DDKY 236
+LD R TF+A+ + +++ VIGGH G+ +VP F + S IP +K
Sbjct: 152 SLDSSRFRTFLAKELN-VSVEDVNAFVIGGH-GDDMVP-FIRYSSVAGIPIENLLSKEKI 208
Query: 237 DALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLPGV 416
D +V R +FGG E+V GSA + + E V+ +K V P Y+ G
Sbjct: 209 DEIVKRTRFGGGEIVNYLK-TGSAFYAPGISITAMVESVIM----DKKRVIPCAAYITGK 263
Query: 417 PGGEAIAKETGCNFFSVPIELGPNGAEK 500
++ F VPI++G G E+
Sbjct: 264 HADHYGIRD---KFIGVPIKIGEKGVEQ 288
>RV1407 Rv1407 COG0144 [J] tRNA and rRNA cytosine-C5-methylases
Length = 457
Score = 34.3 bits (77), Expect = 0.34
Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 8/79 (10%)
Frame = +3
Query: 273 EVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGEKGLVEPXYVYLP-GVPG-------GE 428
E V A D A A G A ++ RAV+G G P VYLP G PG G+
Sbjct: 186 EAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQ 245
Query: 429 AIAKETGCNFFSVPIELGP 485
A+ ++ G + + L P
Sbjct: 246 ALVQDEGSQLVARALTLAP 264
>PM1370 PM1370 COG0442 [J] Prolyl-tRNA synthetase
Length = 571
Score = 33.5 bits (75), Expect = 0.59
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +3
Query: 78 LDIVRAETFVAEITGKAN-PQELTIPVIGGH----SGETIVPLFSKASPSV-QIPDDKYD 239
+D A+T +AE+ + N P E T+ + H SG +V L + + +I +K D
Sbjct: 254 VDTPNAKT-IAELVEQFNQPIEKTVKTLVVHATEESGHKLVALLVRGDHELNEIKAEKVD 312
Query: 240 ALVNRIQFGGDEVVKAKDGAGSATL 314
+ + +QF DE ++A GAG+ +L
Sbjct: 313 IVASPLQFATDEEIRAVVGAGTGSL 337
>NMB0401_2 NMB0401_2 COG1012 [C] NAD-dependent aldehyde
dehydrogenases
Length = 764
Score = 31.2 bits (69), Expect = 2.9
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Frame = +3
Query: 168 SGETIVPLFSKASPSVQIPDDKYDALVNRIQFGGDEVVKAKDGAGSATLSMAYAGFRFAE 347
+GE + P S+ + + + +ALV+++ F +E A G A + R AE
Sbjct: 571 AGEWVAPTLSQIGQADEAALKRLEALVHKLPFNAEEKKAAAAALGHARIRT----LRRAE 626
Query: 348 KVLRAVKGEKGLVE---PXYVYLPGVPGGEAIAKETGCNFFSVPIELGPNGAEKATNP 512
VL GE+ + P V++ G +A A T EL +G + P
Sbjct: 627 TVLTGPTGERNSISWHAPKRVWIHGGSTVQAFAALT---------ELAASGIQAVVEP 675
>MLL8741 mll8741 COG3547 [L] Transposase
Length = 208
Score = 30.4 bits (67), Expect = 5.0
Identities = 19/41 (46%), Positives = 21/41 (50%)
Frame = +2
Query: 47 RPTRPLWCHHPRHRPCRDLRC*DHWQGQPPGADHPRHWWSL 169
RPTRP PR PC R +G+P AD PR W SL
Sbjct: 138 RPTRP----GPREAPCGCNRR----RGRPHPADRPRRWSSL 170
>YIDA yidA COG0561 [R] Predicted hydrolases of the HAD superfamily
Length = 270
Score = 30.0 bits (66), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = +3
Query: 255 IQFGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAV 365
I + G V KA DG+ A +++Y +RF EK+ R V
Sbjct: 67 ITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREV 103
>YJL081C YJL081c COG1077 [D] HSP70 class molecular chaperones
involved in cell morphogen
Length = 489
Score = 30.0 bits (66), Expect = 6.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 261 FGGDEVVKAKDGAGSATLSMAYAGFRFAEKVLRAVKGE 374
+GGDEV GS T ++ Y+G F + +L +V G+
Sbjct: 9 YGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGK 46
>TA0840 Ta0840 COG0464 [O] ATPases of the AAA+ class
Length = 745
Score = 30.0 bits (66), Expect = 6.5
Identities = 24/86 (27%), Positives = 37/86 (42%), Gaps = 6/86 (6%)
Frame = +3
Query: 378 GLVEPXYVYLPGVPG------GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEK 539
G+ P V L G PG A+A E+G NF S+ NG E + + K +
Sbjct: 220 GITPPKGVILYGPPGTGKTLIARAVANESGANFLSI------NGPEIMSKYYGQSEQKLR 273
Query: 540 ALFANAPDGLKGTITMVSFFSTILPK 617
+F+ A + +I + +I PK
Sbjct: 274 EIFSKAEE-TAPSIIFIDEIDSIAPK 298
>TVN0947 TVN0947 COG0464 [O] ATPases of the AAA+ class
Length = 745
Score = 30.0 bits (66), Expect = 6.5
Identities = 24/86 (27%), Positives = 37/86 (42%), Gaps = 6/86 (6%)
Frame = +3
Query: 378 GLVEPXYVYLPGVPG------GEAIAKETGCNFFSVPIELGPNGAEKATNPFEGFTDKEK 539
G+ P V L G PG A+A E+G NF S+ NG E + + K +
Sbjct: 220 GITPPKGVILYGPPGTGKTLIARAVANESGANFLSI------NGPEIMSKYYGQSEQKLR 273
Query: 540 ALFANAPDGLKGTITMVSFFSTILPK 617
+F+ A + +I + +I PK
Sbjct: 274 EIFSKAEE-TAPSIIFIDEIDSIAPK 298
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44277951
Number of Sequences: 78847
Number of extensions: 935280
Number of successful extensions: 2828
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 2723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2796
length of query: 337
length of database: 26,228,252
effective HSP length: 49
effective length of query: 287
effective length of database: 22,364,749
effective search space: 6418682963
effective search space used: 6418682963
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)