BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/1605_B06_C11ZS5.seq
         (1332 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CDA8833 CDa8833  COG0457 [R] TPR-repeat-containing proteins            31  0.11
TP0001 TP0001  COG0593 [L] ATPase involved in DNA replication in...    33  1.4
CDA9099 CDa9099  COG1112 [L] Superfamily I DNA and RNA helicases...    31  5.2
BH0276 BH0276  COG0577 [R] ABC-type transport systems, involved ...    31  5.2
CDA8969 CDa8969  COG0470 [L] ATPase involved in DNA replication        30  8.9
SLR0744 slr0744  COG0532 [J] Translation initiation factor 2 (GT...    30  8.9

>CDA8833 CDa8833  COG0457 [R] TPR-repeat-containing proteins
          Length = 1080

 Score = 31.2 bits (69), Expect(2) = 0.11
 Identities = 21/97 (21%), Positives = 36/97 (36%), Gaps = 1/97 (1%)
 Frame = -1

Query: 579 PHTKNN-EERTKIETQGATHVTDRHAVALLFAVYSNTPHRPPQHGRTSPGPTPPARPILR 403
           PH K   E+ TK + +G TH       +    +         Q  +    P PP +   +
Sbjct: 466 PHIKARLEQLTKYQQEGNTHPPQPPPSSQQPRLPQGMVLESTQQQQQQQPPPPPQQQQQQ 525

Query: 402 RNHKARAQTPPTQQNHITQEQKTTQHNTQQPTTEAHP 292
             H++++Q  P Q      +    QH +  P  +  P
Sbjct: 526 LQHQSQSQPQPQQPPQTQSQPSLLQHQSSLPPQQIQP 562



 Score = 23.9 bits (50), Expect(2) = 0.11
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
 Frame = -3

Query: 247 PKTTSHCITKATRNKNEPTEHNGVTSHPTPQPNPNCNKQHTEQTKPTRD---TTGSTPXE 77
           P    H    +   +  PT+      H  P P P   +Q   Q +P      T   +P  
Sbjct: 598 PHLPPHTQQPSQIQEKPPTQEQ---PHYQPPPPPQHQQQSQSQPQPPHQPQHTQNQSPQL 654

Query: 76  KTHPXAISXPXKRPNRAP 23
              P   S P  +P+ AP
Sbjct: 655 AQLPPHHSNPPAKPHGAP 672



>TP0001 TP0001  COG0593 [L] ATPase involved in DNA replication
           initiation
          Length = 464

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
 Frame = -1

Query: 510 HAVALLFAVYSNTPH---RPPQHGRTSPGPTPPARPILRRNHKARAQTPPTQQNHITQEQ 340
           H + LLFAV   TPH    PP+H  T      PA    +++         T +N ++ E+
Sbjct: 74  HPIKLLFAVKKGTPHGNTAPPKHVHTYLEKNSPAEVPSKKSFHPDLNRDYTFENFVSGEE 133

Query: 339 KTTQHN-----TQQPTTEAHP 292
               H+     ++ P T  +P
Sbjct: 134 TKFSHSAAISVSKNPGTSYNP 154



>CDA9099 CDa9099  COG1112 [L] Superfamily I DNA and RNA helicases and
            helicase subunits
          Length = 2018

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 20/76 (26%), Positives = 32/76 (41%), Gaps = 3/76 (3%)
 Frame = -3

Query: 247  PKTTSHCITKATRNKNEPTEHNGVTSHPTP---QPNPNCNKQHTEQTKPTRDTTGSTPXE 77
            P  +++ +  + +  N+ T+ N     P P   QP P    Q   +  PTR  T S P  
Sbjct: 1882 PDYSANNLQSSAKQSNKDTKSNTTDDAPKPYINQPKP----QGDPKNGPTRSGTISKPST 1937

Query: 76   KTHPXAISXPXKRPNR 29
             + P   S    +PN+
Sbjct: 1938 TSTPAPTSSGTVKPNK 1953



>BH0276 BH0276  COG0577 [R] ABC-type transport systems, involved in
            lipoprotein release,
          Length = 541

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 1144 FVATRAFFIPVTFSLTFTFAYLGL*YFVLHRHSAGQQESWHSVRS---QKVXIFVHITRN 1314
            FV    FFI    SL F  A + + YF L    AG++E +  +R        + V +TR 
Sbjct: 419  FVKRIMFFIGFMLSLLFLSAAMSILYFYLQTSLAGEKEKYLGIRKIGLSMKEMSVIVTRE 478

Query: 1315 IYIML 1329
            + I++
Sbjct: 479  LSILI 483



>CDA8969 CDa8969  COG0470 [L] ATPase involved in DNA replication
          Length = 897

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 19/83 (22%), Positives = 32/83 (37%)
 Frame = -3

Query: 895 TSNSRRGKPASTTRGINT*QMRYTSHDTVISGTQTSTQNRDDSSSCCELIKPHSNQK*NA 716
           T N    K  ST++        Y   + V++GT    +NR  S +  ++ + +  +    
Sbjct: 41  TGNQNTKKNTSTSKIRKDKDQSYGGDEKVVNGTTEKLENRPTSLTSKDIFRIYREKDKQK 100

Query: 715 YTLCTPQHNKCNTPRHHKHFQIP 647
           YTL   Q    +   H  H   P
Sbjct: 101 YTLPDDQEPPVHHQPHETHQAFP 123



>SLR0744 slr0744  COG0532 [J] Translation initiation factor 2
           (GTPase)
          Length = 1001

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 468 HRPPQHGRTSPG-PTPPARPILRRNHKARAQTPPTQQNHITQEQKTTQHNTQQPTTEAHP 292
           H+  + G  SP  PTPP RP L+         PP  +    + QK  +   + P + A P
Sbjct: 88  HKQEKSGGPSPARPTPPPRPKLQAPKAPTPPQPPVAKASAPKIQKQEEPAQEAPKSVAPP 147



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56762639
Number of Sequences: 78847
Number of extensions: 1122300
Number of successful extensions: 3143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of query: 444
length of database: 26,228,252
effective HSP length: 49
effective length of query: 394
effective length of database: 22,364,749
effective search space: 8811711106
effective search space used: 8811711106
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)