TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsNca/blast/0941_E12_I23ZS5.seq
         (907 letters)

Database: /phillip/Ncr/Ncr_G
           995 sequences; 37,969,317 total letters

Searching....................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCR_G_C2.675 Ncr_G_C2.675                                              36  0.12
NCR_G_C2.529 Ncr_G_C2.529                                              33  0.78
NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G...    31  1.3
NCR_G_C2.053 Ncr_G_C2.053                                              32  1.4
NCR_G_C2.265 Ncr_G_C2.265                                              30  3.5
NCR_G_C2.615 Ncr_G_C2.615                                              31  3.6
NCR_G_C2.416 Ncr_G_C2.416                                              30  4.8
NCR_G_C2.259 Ncr_G_C2.259                                              29  4.8
NCR_G_C2.736 Ncr_G_C2.736                                              29  6.6
NCR_G_C2.874 Ncr_G_C2.874                                              29  6.6
NCR_G_C2.574 Ncr_G_C2.574                                              29  9.0
NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G...    29  9.0
NCR_G_C2.047 Ncr_G_C2.047                                              29  9.0

>NCR_G_C2.675 Ncr_G_C2.675
          Length = 27189

 Score = 35.9 bits (72), Expect = 0.12
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2 / -3

                                         
Query: 17   IXARAITNSSTPPTSSRIPVVGEPAMADD 103
            I A  +T+ +TPPT+SR   VGEPA + +
Sbjct: 1711 ISAARVTDGTTPPTTSRQSFVGEPASSSN 1625


>NCR_G_C2.529 Ncr_G_C2.529
          Length = 103305

 Score = 33.1 bits (66), Expect = 0.78
 Identities = 15/36 (41%), Positives = 21/36 (57%)
 Frame = +2 / +3

                                                 
Query: 59    SSRIPVVGEPAMADDVRELLLSTTADADPSTPLSAP 166
             S+ +P + +P     V EL LS+   A PSTP+S P
Sbjct: 84921 SNNLPSLFQPLSTSSV*ELPLSSP*GASPSTPISTP 85028


>NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G_C2.022
             from base 400001
          Length = 110000

 Score = 31.3 bits (62), Expect = 1.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1 / +3

                                 
Query: 550   PRIWIRWGRASRVWASSG*W 609
             PR W R G  +R  ASSG*W
Sbjct: 94464 PRYWHRLGHGTRTCASSG*W 94523


>NCR_G_C2.053 Ncr_G_C2.053
          Length = 105864

 Score = 32.2 bits (64), Expect = 1.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2 / -2

                                                     
Query: 8     SAGIXARAITNSSTPPTSSRIPVVGEPAMADDVRELLLST 127
             SA      + NS  PPT SR+P    PAM   +R  L  T
Sbjct: 89408 SATAHTGRVKNSPCPPTPSRLPAGTYPAMRSSLRMALPKT 89289


>NCR_G_C2.265 Ncr_G_C2.265
          Length = 91342

 Score = 29.9 bits (59), Expect = 3.5
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +3 / -2

                                      
Query: 15    GXRLEQSPTAQLLPRVPGSLSSASR 89
             G  LEQ PTA LL    GS SSASR
Sbjct: 39579 GSTLEQVPTAYLLSWHLGSRSSASR 39505


>NCR_G_C2.615 Ncr_G_C2.615
          Length = 130067

 Score = 30.8 bits (61), Expect = 3.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2 / +2

                                                           
Query: 29    AITNSSTPPTSSRIPVVGEPAMADDVRELLLSTTADADPSTPLSAP 166
             A+T + TPP SSR P V  P ++        ++      ST  + P
Sbjct: 96281 AVTTTKTPPLSSRSPSVTTPTLSSPSSPASSASACPPSTSTSRAGP 96418


>NCR_G_C2.416 Ncr_G_C2.416
          Length = 188447

 Score = 29.9 bits (59), Expect = 6.7
 Identities = 13/23 (56%), Positives = 15/23 (64%)
 Frame = +2 / -1

                                    
Query: 98    DDVRELLLSTTADADPSTPLSAP 166
             D V  LLLSTT    PS+P+S P
Sbjct: 50159 DGVSPLLLSTTTTPAPSSPMSFP 50091


 Score = 29.5 bits (58), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1 / -2

                                        
Query: 94    HCRLADDRDPGTRGRS*AVGDCSSRNP 14
             +C    DRDPG R R+  V +   R P
Sbjct: 89740 YCHRHRDRDPGPRARATRVSNQHRRLP 89660


>NCR_G_C2.259 Ncr_G_C2.259
          Length = 185660

 Score = 29.5 bits (58), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (57%)
 Frame = +1 / +1

                               
Query: 559    WIRWGRASRVWASSG*W 609
              W+RWG AS  W  S  W
Sbjct: 101518 WMRWGEASWTWILSSGW 101568


>NCR_G_C2.736 Ncr_G_C2.736
          Length = 110835

 Score = 29.0 bits (57), Expect = 6.6
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = -1 / -1

                             
Query: 616  CLPITPKKPKHDWLVPT 566
            CLP  PKKP+ D LV T
Sbjct: 6093 CLPSPPKKPRRDVLVMT 6043


>NCR_G_C2.874 Ncr_G_C2.874
          Length = 15552

 Score = 29.0 bits (57), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1 / -2

                          
Query: 556  IWIRWGRASRVWAS 597
            +W  WGRA+ VWA+
Sbjct: 9599 VWATWGRATLVWAT 9558


>NCR_G_C2.574 Ncr_G_C2.574
          Length = 180542

 Score = 28.6 bits (56), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = +1 / +3

                             
Query: 553   RIWIRWGRASRVWASS 600
             R+W+RWGR SR   S+
Sbjct: 51174 RLWLRWGRISRTNTST 51221


>NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G_C2.042
             from base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = -1 / +3

                                    
Query: 607   ITPKKPKHDWLVPTGSRSSGVHQ 539
             I+P   +  WL PTGSR+  V++
Sbjct: 22758 ISPGSRQEPWLQPTGSRTPSVYE 22826


>NCR_G_C2.047 Ncr_G_C2.047
          Length = 11556

 Score = 28.6 bits (56), Expect = 9.0
 Identities = 12/38 (31%), Positives = 16/38 (41%)
 Frame = -3 / -2

                                                  
Query: 668  PXXPPHXXXXXXXXXXXXPPHHPEEAQTRLARPHRIQI 555
            P  PP+            P  HP +AQ +  +PH I I
Sbjct: 1217 PSPPPNARNLPFSFPITSPGLHPMQAQPQQQQPHTILI 1104


  Database: /phillip/Ncr/Ncr_G
    Posted date:  Jan 24, 2002  1:55 PM
  Number of letters in database: 37,969,317
  Number of sequences in database:  995
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 25474042
Number of Sequences: 995
Number of extensions: 234805
Number of successful extensions: 22645
Number of sequences better than 10.0: 13
length of query: 302
length of database: 12,656,439
effective HSP length: 47
effective length of query: 254
effective length of database: 12,609,674
effective search space: 3202857196
effective search space used: 3202857196
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 56 (28.6 bits)