TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsNca/blast/0941_F11_K21ZS5.seq
         (961 letters)

Database: /phillip/Ncr/Ncr_G
           995 sequences; 37,969,317 total letters

Searching....................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCR_G_C2.574 Ncr_G_C2.574                                              35  0.082
NCR_G_C2.701 Ncr_G_C2.701                                              32  0.76
NCR_G_C2.110 Ncr_G_C2.110                                              31  1.4
NCR_G_C2.208 Ncr_G_C2.208                                              31  2.0
NCR_G_C2.256 Ncr_G_C2.256                                              30  2.7
NCR_G_C2.341 Ncr_G_C2.341                                              30  2.7
NCR_G_C2.379 Ncr_G_C2.379                                              30  2.7
NCR_G_C2.058 Ncr_G_C2.058                                              30  3.7
NCR_G_C2.156 Ncr_G_C2.156                                              26  4.2
NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G...    29  5.1
NCR_G_C2.038 Ncr_G_C2.038                                              29  5.1
NCR_G_C2.237 Ncr_G_C2.237                                              29  5.1
NCR_G_C2.630 Ncr_G_C2.630                                              29  5.1
NCR_G_C2.546 Ncr_G_C2.546                                              29  7.0
NCR_G_C2.404 Ncr_G_C2.404                                              29  7.0
NCR_G_C2.598 Ncr_G_C2.598                                              29  7.0
NCR_G_C2.084 Ncr_G_C2.084                                              29  7.0
NCR_G_C2.230 Ncr_G_C2.230                                              29  7.0
NCR_G_C2.218 Ncr_G_C2.218                                              29  9.7
NCR_G_C2.192 Ncr_G_C2.192                                              29  9.7
NCR_G_C2.349 Ncr_G_C2.349                                              29  9.7
NCR_G_C2.174 Ncr_G_C2.174                                              29  9.7
NCR_G_C2.016 Ncr_G_C2.016                                              29  9.7

>NCR_G_C2.574 Ncr_G_C2.574
          Length = 180542

 Score = 35.4 bits (71), Expect = 0.082
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3 / +1

                                 
Query: 302   THPAPGAPCTPASPPGKKKV 243
             T PAP  P  PASPPG+K+V
Sbjct: 50545 TPPAPPCPLRPASPPGEKRV 50604


>NCR_G_C2.701 Ncr_G_C2.701
          Length = 74456

 Score = 32.2 bits (64), Expect = 0.76
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2 / +1

                                
Query: 59   PSATSLSPIPQSPLRDPSIP 118
            PSATSLSP P +PL   SIP
Sbjct: 8869 PSATSLSP*PSTPLARGSIP 8928


 Score = 28.6 bits (56), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3 / +1

                           
Query: 302   THPAPGAPCTPASP 261
             T+PAP  P  PA+P
Sbjct: 33355 TNPAPSTPAQPATP 33396


>NCR_G_C2.110 Ncr_G_C2.110
          Length = 102633

 Score = 31.3 bits (62), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = -1 / -1

                                             
Query: 361   QGATTGSGGGIIPAVSNRDPLIPHQVLPALQH 266
             QGA   +   +IP   ++ P   HQVLP+LQH
Sbjct: 78558 QGAPHDAAILLIPDSRSQQPQSQHQVLPSLQH 78463


>NCR_G_C2.208 Ncr_G_C2.208
          Length = 202230

 Score = 30.8 bits (61), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3 / +2

                                           
Query: 326   PRGIE*GSTHPAPGAPCTPASPPGKKKVLR 237
             P  ++   + PA G PC P S PG   +LR
Sbjct: 38378 PPAVQSAHSSPATG*PCVPVSGPGSLYLLR 38467


>NCR_G_C2.256 Ncr_G_C2.256
          Length = 141304

 Score = 30.4 bits (60), Expect = 2.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3 / +1

                                              
Query: 365    KSGSNHRKRWRNNPRGIE*GSTHPAPGAPCTP 270
              K+GSN  + W     GI   S HP P   C P
Sbjct: 124291 KNGSNENREW*RLGYGIIDSSLHPRPQKGCHP 124386


>NCR_G_C2.341 Ncr_G_C2.341
          Length = 89049

 Score = 30.4 bits (60), Expect = 2.7
 Identities = 12/38 (31%), Positives = 18/38 (46%)
 Frame = +2 / -2

                                                   
Query: 62    SATSLSPIPQSPLRDPSIPDAKKXXXXXXXXXXXXDQT 175
             S+ ++SP+P SP    + PDA+             DQT
Sbjct: 26165 SSRAISPVPPSPSAQDTQPDAESSAPSKGTAGAMADQT 26052


>NCR_G_C2.379 Ncr_G_C2.379
          Length = 245776

 Score = 29.9 bits (59), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3 / -1

                                                 
Query: 296  PAPGAPCTPASPPGKKKVLRVEVIRRPLVELNIRLPH 186
            P P A   P S P ++    V ++R P    ++ LP 
Sbjct: 7216 PTPPARLVPTSTPSERSPCPVALVRAPAGHQSLTLPW 7106


 Score = 28.6 bits (56), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3 / -3

                                     
Query: 305    STHPAPGAPCTPASPPGKKKVLR 237
              S+ P PG PC P  PP   ++ R
Sbjct: 137354 SSSPRPGPPCHPWDPPHHHRLRR 137286


 Score = 24.4 bits (47), Expect(2) = 2.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3 / -3

                                 
Query: 302    THPAPGAPCTPASPPGKKK 246
              T PAP  P    SPP K +
Sbjct: 175823 TRPAPRRPSEQRSPPNKPR 175767


 Score = 23.5 bits (45), Expect(2) = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3 / -3

                             
Query: 368    QKSGSNHRKRWRNNP 324
              Q+S S  R+ WR +P
Sbjct: 175949 QQSTSERREDWRTDP 175905


>NCR_G_C2.058 Ncr_G_C2.058
          Length = 62744

 Score = 29.9 bits (59), Expect = 3.7
 Identities = 12/28 (42%), Positives = 13/28 (45%)
 Frame = -3 / +1

                                         
Query: 341   RWRNNPRGIE*GSTHPAPGAPCTPASPP 258
             RWR  P     G   P PG P  P+S P
Sbjct: 20257 RWRTFPYFSRQGDKRPPPGRPTRPSSRP 20340


>NCR_G_C2.156 Ncr_G_C2.156
          Length = 67929

 Score = 26.3 bits (51), Expect(2) = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3 / +3

                                  
Query: 341   RWRNNPRGIE*GSTHPAPGAP 279
             RWR  P+  +  ST PAP AP
Sbjct: 33516 RWRCPPKYTQTRSTPPAPPAP 33578


 Score = 21.2 bits (40), Expect(2) = 4.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3 / +3

                        
Query: 290   PGAPCTPASPP 258
             P  PC  ASPP
Sbjct: 33570 PAPPCHRASPP 33602


>NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G_C2.022
             from base 100001
          Length = 110000

 Score = 29.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -2 / -1

                               
Query: 111   DGSRRGDWGMGERDVADG 58
             DG RRG+ G+G+R   DG
Sbjct: 86504 DGERRGERGLGQRQADDG 86451


 Score = 29.5 bits (58), Expect = 5.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3 / -3

                                   
Query: 246   LFFTRXRCWSAGSTWCGMSGSL 311
             L   R R +S GSTWC +  SL
Sbjct: 22242 LSLARERAFSRGSTWCFLINSL 22177


>NCR_G_C2.038 Ncr_G_C2.038
          Length = 68631

 Score = 29.5 bits (58), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = -3 / -3

                                            
Query: 296   PAPGAPCTPASPPGKKKVLRVEVIRRPLVEL 204
             P    PCT A PPG   +L+      PL+ L
Sbjct: 30895 PMTSRPCTRAKPPGSSLILKARSG*PPLLRL 30803


>NCR_G_C2.237 Ncr_G_C2.237
          Length = 91678

 Score = 29.5 bits (58), Expect = 5.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1 / -3

                                 
Query: 61    IRYVSLPHSPIPSTRSIHPR 120
             + Y+ LPH  +P+  SIHPR
Sbjct: 30401 LSYLDLPHYFLPTRTSIHPR 30342


>NCR_G_C2.630 Ncr_G_C2.630
          Length = 57359

 Score = 29.5 bits (58), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -3 / +2

                                         
Query: 296  PAPGAPCTPASPPGKKKVLRVEVIRRPLV 210
            P P + C P+SPP   ++L V   R  +V
Sbjct: 9584 PTPSSTCDPSSPPSLSELLVVGFCRSTIV 9670


>NCR_G_C2.546 Ncr_G_C2.546
          Length = 112644

 Score = 29.0 bits (57), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2 / +1

                                                
Query: 300    SSRTRCSLHSSIAXXXXXXXXGRSHPAASRRTQH 199
              S RTRCS+H S +        GR   +AS RT H
Sbjct: 106879 SIRTRCSVHGSQSWKSFRRSRGREGRSASGRTLH 106980


>NCR_G_C2.404 Ncr_G_C2.404
          Length = 264766

 Score = 29.0 bits (57), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = -3 / +3

                               
Query: 125   WHLGWMDLVEGIGEWGRE 72
             W L W  L+ G G+W +E
Sbjct: 42708 WRLLWRSLIAGSGDWSKE 42761


 Score = 28.6 bits (56), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3 / +1

                             
Query: 296    PAPGAPCTPASPPGK 252
              P+P  PC P  PPG+
Sbjct: 169450 PSPSLPCPPPRPPGR 169494


>NCR_G_C2.598 Ncr_G_C2.598
          Length = 13599

 Score = 29.0 bits (57), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3 / +2

                                           
Query: 240  KNLFFTRXRCWSAGSTWCGMSGSLFDTAGII 332
            ++LFF      + GS+WC  +G L +  G +
Sbjct: 7739 EHLFFMHGCACTCGSSWCKCAGHLSEAKGFL 7831


>NCR_G_C2.084 Ncr_G_C2.084
          Length = 110311

 Score = 29.0 bits (57), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +1 / +1

                                    
Query: 31   HALLXSRXRXIRYVSLPHSPIPST 102
            HAL     R +R++ LPH P+P +
Sbjct: 7834 HALPLRYPRRLRHIPLPHCPLPGS 7905


>NCR_G_C2.230 Ncr_G_C2.230
          Length = 223934

 Score = 29.0 bits (57), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -3 / +3

                               
Query: 299    HPAPGAPCTPASPPGKK 249
              HP PG    PA PPG++
Sbjct: 134376 HPGPGYNMAPAGPPGQR 134426


>NCR_G_C2.218 Ncr_G_C2.218
          Length = 129490

 Score = 28.6 bits (56), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3 / -2

                                    
Query: 332   NNPRGIE*GSTHPAPGAPCTPAS 264
             +NP    * +T PA   PCTPA+
Sbjct: 19965 SNPNNSY*PTTSPARSGPCTPAA 19897


>NCR_G_C2.192 Ncr_G_C2.192
          Length = 20973

 Score = 28.6 bits (56), Expect = 9.7
 Identities = 13/43 (30%), Positives = 19/43 (43%)
 Frame = -3 / +2

                                                       
Query: 359  GSNHRKRWRNNPRGIE*GSTHPAPGAPCTPASPPGKKKVLRVE 231
            G + R  WR+  R        PAP  P    +PP  +++  VE
Sbjct: 7133 GRDGRTHWRSEKRPAPARPLRPAPPRPPRAPTPPQTRRLAGVE 7261


>NCR_G_C2.349 Ncr_G_C2.349
          Length = 77580

 Score = 28.6 bits (56), Expect = 9.7
 Identities = 13/31 (41%), Positives = 15/31 (47%)
 Frame = -3 / -1

                                            
Query: 347   RKRWRNNPRGIE*GSTHPAPGAPCTPASPPG 255
             R+R R   R    GS  P+P   C P SP G
Sbjct: 29295 RRRRRCRRRRRRIGSPSPSPSLSCRPRSPSG 29203


>NCR_G_C2.174 Ncr_G_C2.174
          Length = 16440

 Score = 28.6 bits (56), Expect = 9.7
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = -1 / -2

                            
Query: 112 GWIS*RGLGNGGERRSG 62
           GW+S*R LGN   RR G
Sbjct: 779 GWVS*RLLGNNRNRREG 729


>NCR_G_C2.016 Ncr_G_C2.016
          Length = 8245

 Score = 28.6 bits (56), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3 / -2

                                     
Query: 344  KRWRNNPRGIE*GSTHPAPGAPCTP 270
            K W   P GI+ G+  P    PCTP
Sbjct: 2256 KSWLCGPMGIQGGN*GPCEQLPCTP 2182


  Database: /phillip/Ncr/Ncr_G
    Posted date:  Jan 24, 2002  1:55 PM
  Number of letters in database: 37,969,317
  Number of sequences in database:  995
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 28022705
Number of Sequences: 995
Number of extensions: 329683
Number of successful extensions: 31637
Number of sequences better than 10.0: 23
length of query: 320
length of database: 12,656,439
effective HSP length: 47
effective length of query: 272
effective length of database: 12,609,674
effective search space: 3429831328
effective search space used: 3429831328
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 56 (28.6 bits)