TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsNca/blast/0941_H06_O11ZS5.seq
         (1020 letters)

Database: /phillip/Ncr/Ncr_G
           995 sequences; 37,969,317 total letters

Searching....................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCR_G_C2.434 Ncr_G_C2.434                                              32  1.1
NCR_G_C2.349 Ncr_G_C2.349                                              29  5.5
NCR_G_C2.629 Ncr_G_C2.629                                              29  7.5

>NCR_G_C2.434 Ncr_G_C2.434
          Length = 52670

 Score = 31.8 bits (63), Expect = 1.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1 / -2

                                       
Query: 922   SRVVPACRSPPLRGVARPSLSPAWPV 999
             S + P+ RSPP      PS  P+WPV
Sbjct: 23320 SWLTPSARSPPALSSPPPSRPPSWPV 23243


>NCR_G_C2.349 Ncr_G_C2.349
          Length = 77580

 Score = 29.5 bits (58), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1 / +2

                                
Query: 937   ACRSPPLRGVARPSLSPAW 993
             A +SPP    +RPS++P+W
Sbjct: 50885 ASKSPPTSSKSRPSMAPSW 50941


>NCR_G_C2.629 Ncr_G_C2.629
          Length = 73227

 Score = 29.0 bits (57), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1 / +3

                                   
Query: 934   PACRSPPLRGVARPSLSPAWPV 999
             PA   PP+  +  PSLSPA PV
Sbjct: 69597 PASAVPPVSRLLSPSLSPACPV 69662


  Database: /phillip/Ncr/Ncr_G
    Posted date:  Jan 24, 2002  1:55 PM
  Number of letters in database: 37,969,317
  Number of sequences in database:  995
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 32198610
Number of Sequences: 995
Number of extensions: 226151
Number of successful extensions: 21336
Number of sequences better than 10.0: 3
length of query: 340
length of database: 12,656,439
effective HSP length: 49
effective length of query: 290
effective length of database: 12,607,684
effective search space: 3656228360
effective search space used: 3656228360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 56 (28.6 bits)