TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_A04_A07ZS5.seq
         (890 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14270686_1 gi-14270686_1.seq Continuation (1 of 9) of gi-1427...   193  7e-50
GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-686257...    35  0.027
GI-7839148_10 gi-7839148_10.seq Continuation (10 of 16) of gi-78...    31  0.64
GI-14277709_3 gi-14277709_3.seq Continuation (3 of 7) of gi-1427...    31  0.64
GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of gi-783...    30  0.88
GI-14318434_01 gi-14318434_01.seq Continuation (1 of 11) of gi-1...    29  3.1
GI-6324971_04 gi-6324971_04.seq Continuation (4 of 10) of gi-632...    28  4.3
GI-6323501_06 gi-6323501_06.seq Continuation (6 of 10) of gi-632...    28  5.9
GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-1462...    26  6.8
GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-783...    27  8.1
GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-632...    27  8.1
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    27  8.1
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    27  8.1
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    25  9.9

>GI-14270686_1 gi-14270686_1.seq Continuation (1 of 9) of gi-14270686
             from base 1
          Length = 110000

 Score =  193 bits (416), Expect = 7e-50
 Identities = 78/99 (78%), Positives = 91/99 (91%)
 Frame = +1 / -2

                                                                         
Query: 43    SARIREQVADRIPVIVEKADKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIF 222
             S RI ++  +RIPVI EKA+KSD+PEIDK+KYLVPADLTVGQFVYV+RKRI L PEKAIF
Sbjct: 80674 SERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIF 80495

                                                    
Query: 223   VFVNSTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 339
             +FVN TLPPTA+LMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 80494 IFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 80378


 Score =  139 bits (298), Expect = 1e-33
 Identities = 70/108 (64%), Positives = 77/108 (70%)
 Frame = -1 / +3

                                                                         
Query: 365   VAAHMD*AEPKVFSPL*VMYRKPSSSLFSS*IADINEAVGGKVLFTKTKMAFSGLSLILF 186
             ++ H+    P VFSP *V Y+ PS SL S  +ADIN AVGGKV  TK KMAFSG S+ILF
Sbjct: 80352 ISFHIKDYLPNVFSPE*VTYKNPSLSLCS*YMADINAAVGGKVSLTKMKMAFSGGSIILF 80531

                                                             
Query: 185   RTT*TNWPTVRSAGTRYFFLSISGTSDLSAFSTITGILSATCSRILAD 42
               T*TN PTVRSAGTRY  LSISG SD SAFS ITGIL    S IL+D
Sbjct: 80532 LIT*TNCPTVRSAGTRYLRLSISGISDFSAFSQITGILFLNLSAILSD 80675


 Score = 78.5 bits (165), Expect = 3e-15
 Identities = 38/99 (38%), Positives = 59/99 (59%)
 Frame = -3 / +2

                                                                         
Query: 339   AESVLATVSHVQEAVLVLVFFIDR*HQRSSRWQGAIHKDEDGLFWAQLDPLPHHVDKLAN 160
             A+ + + VS +Q+ VL+LVF I   HQR SRWQ  I K+EDGL     + L ++++KL  
Sbjct: 80378 AKCIFS*VSDIQKPVLILVFLIYGRHQRRSRWQSIIDKNEDGLLRG*HNSLSYNINKLPY 80557

                                                    
Query: 159   SEVGRDKVLLLINFRDIRLISLLNDHRNSVSNLLTDPSR 43
              +V R+ +  LIN  +I L S   +HR  +   +++P R
Sbjct: 80558 GKVSRN*IFTLINLWNI*LFSFFANHRYPILEPVSNPLR 80674


 Score = 52.8 bits (109), Expect = 2e-07
 Identities = 26/62 (41%), Positives = 37/62 (58%)
 Frame = +3 / -1

                                                                         
Query: 147   CRPHCWPVCLRGAEEDQAEPRKGHLRLCE*HLATDCFVDVSDL*RKQGRGRLPVHDLQWR 326
             C P+   +CL   +E+ A P +GHL  C+*+ AT C VDV  + R QG GR+ V  L  R
Sbjct: 80570 C*PYRRAICLCYKKENYATP*EGHLHFCQ*YFATYCGVDVCHISRTQG*GRVFVCHLLRR 80391

               
Query: 327   EH 332
             ++
Sbjct: 80390 KY 80385


 Score = 39.1 bits (79), Expect = 0.002
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +2 / -3

                                                  
Query: 209   KRPSSSL*IAPCHRLLR*CQRSMKKTRTRTASCT*LT 319
             +RPSS L +  CH L R*C   +K TR RT  C  LT
Sbjct: 80508 RRPSSFLSMILCHLLRR*CLPYIKNTRIRTGFCMSLT 80398


 Score = 38.2 bits (77), Expect = 0.004
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = -2 / +1

                                                     
Query: 307   TGSRPRPCFLHRSLTSTKQSVARCYSQRRRWPFLGSA*SS 188
             T +RP PC L    TST Q VA+ + Q+ RWP  G A* S
Sbjct: 80410 TKTRPYPCVLDIWQTSTPQ*VAKYH*QK*RWPSQGVA*FS 80529


>GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-6862570 from
             base 400001
          Length = 110000

 Score = 35.4 bits (71), Expect = 0.027
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1 / -1

                                                               
Query: 109   DVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVNSTLPPTAS 258
             + P  + +KY    ++  GQF Y V  +   SP K I++F   T   TA+
Sbjct: 79262 ECPRYESRKYSNTIEICSGQFKYNVSSK*PCSPIKKIYIFAKLTATITAA 79113


>GI-7839148_10 gi-7839148_10.seq Continuation (10 of 16) of gi-7839148
             from base 900001
          Length = 110000

 Score = 30.8 bits (61), Expect = 0.64
 Identities = 15/48 (31%), Positives = 26/48 (53%)
 Frame = -1 / -1

                                                             
Query: 233   FTKTKMAFSGLSLILFRTT*TNWPTVRSAGTRYFFLSISGTSDLSAFS 90
             F  + + FSGL +I +++   NW T R +G   + +  + T  L+ FS
Sbjct: 65432 FDGSHLNFSGLLIIKWQSISANWKTFRPSGQYTYNILFTITFRLTPFS 65289


>GI-14277709_3 gi-14277709_3.seq Continuation (3 of 7) of gi-14277709
             from base 200001
          Length = 110000

 Score = 30.8 bits (61), Expect = 0.64
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -1 / +1

                                                 
Query: 143   TRYFFLSISGTSDLSAFSTITGILSATCSRILADQL 36
             TRY  LS +  + L  FSTI  I S TCS  L D L
Sbjct: 54910 TRYDILSKAVVNLLLWFSTIALICSKTCSNSLFDAL 55017


>GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of gi-7839148
             from base 1
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.88
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = -3 / +3

                                             
Query: 120   FRDIRLISLLNDHRNSVSNLLTDPSRSACSHS 25
             FRD  + + +N H    S +L+D    +C HS
Sbjct: 48681 FRDAHVFNCINFHETHTSTMLSDLMNLSCIHS 48776


>GI-14318434_01 gi-14318434_01.seq Continuation (1 of 11) of gi-14318434
             from base 1
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3 / +2

                                         
Query: 117   RDIRLISLLNDHRNSVSNLLTDPSRSAC 34
             RD + ISLL+     ++  L  PSRSAC
Sbjct: 55001 RDRQRISLLDLQSAEINGFLGQPSRSAC 55084


>GI-6324971_04 gi-6324971_04.seq Continuation (4 of 10) of gi-6324971
             from base 300001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 10/17 (58%), Positives = 11/17 (63%)
 Frame = +3 / -2

                              
Query: 303   PVHDLQWREHFRLCLIH 353
             P+H LQWR   R CL H
Sbjct: 40927 PMHTLQWRNLQRWCLKH 40877


>GI-6323501_06 gi-6323501_06.seq Continuation (6 of 10) of gi-6323501
             from base 500001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3 / -1

                                
Query: 387   NIHSFIYSGSAHGLGRAES 331
             N+H+F  +GS++ +GR ES
Sbjct: 21056 NLHNFRLNGSSNNIGRTES 21000


>GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-14627172
             from base 100001
          Length = 110000

 Score = 26.3 bits (51), Expect(2) = 6.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2 / +1

                          
Query: 380   WMFRLRRLCTYYH 418
             ++  LRRLC YYH
Sbjct: 61291 FILHLRRLCVYYH 61329


 Score = 18.5 bits (34), Expect(2) = 6.8
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2 / +1

                       
Query: 464   VFYHLNVRTA 493
             V+YH  V T 
Sbjct: 61318 VYYHFPVVTL 61347


>GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-7839148
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -2 / +1

                              
Query: 250   SVARCYSQRRRWPFLGS 200
             +V RC S + +WP+LGS
Sbjct: 93913 TVQRCTSIKLQWPYLGS 93963


>GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-6323501
             from base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2 / +2

                                           
Query: 352   WIRQSRKCSRHCKSCTGSRPRPCFLHRSLT 263
             W    +  S++ K CTG+ P P  +  +LT
Sbjct: 81092 W*LSLKTLSKNLKVCTGAHPHPQAMKNTLT 81181


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
             chromosome III, complete c
          Length = 316613

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3 / -1

                                   
Query: 429   PAY***YVHRRRNLNIHSFIYS 364
             PA  **+VH +R LN H F+ S
Sbjct: 29642 PAAK**FVHHQRVLNFHCFVNS 29577


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
              chromosome I, complete chro
          Length = 230203

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 14/37 (37%), Positives = 16/37 (42%)
 Frame = -2 / -1

                                                   
Query: 358    RTWIRQSRKCSRHCKSCTGSRPRPCFLHRSLTSTKQS 248
              R W R S  C +       S P PCF  RSL +   S
Sbjct: 129682 RPWRRCSSPCCQLPLPVLDSFPLPCFRPRSLPALSSS 129572


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
             chromosome VI, complete ch
          Length = 270148

 Score = 24.9 bits (48), Expect(2) = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = -2 / -1

                                        
Query: 301   SRPRPCFLHRSLTSTKQSVARCYSQRR 221
             SRP    LH+ + ST +S  RC+   R
Sbjct: 57025 SRPSCSNLHKKVDSTLRSFDRCHKVLR 56945


 Score = 18.9 bits (35), Expect(2) = 9.9
 Identities = 5/7 (71%), Positives = 7/7 (99%)
 Frame = -2 / -1

                    
Query: 232   SQRRRWP 212
             ++RRRWP
Sbjct: 56845 ARRRRWP 56825


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 16763750
Number of Sequences: 122
Number of extensions: 251334
Number of successful extensions: 14223
Number of sequences better than 10.0: 14
length of query: 296
length of database: 4,402,102
effective HSP length: 44
effective length of query: 252
effective length of database: 4,396,734
effective search space: 1107976968
effective search space used: 1107976968
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)