TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_A06_A11ZS5.seq
         (963 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6862570_2 gi-6862570_2.seq Continuation (2 of 6) of gi-686257...    32  0.37
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    30  1.3
GI-14318439_02 gi-14318439_02.seq Continuation (2 of 11) of gi-1...    29  1.8
GI-7839148_11 gi-7839148_11.seq Continuation (11 of 16) of gi-78...    29  2.5
GI-7839148_10 gi-7839148_10.seq Continuation (10 of 16) of gi-78...    29  2.5
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    29  2.5
GI-6323989_1 gi-6323989_1.seq Continuation (1 of 8) of gi-632398...    28  4.7
GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-727623...    28  6.5
GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-686257...    28  6.5
GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-1462...    28  6.5
GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-1...    28  6.5
GI-14389432_03 gi-14389432_03.seq Continuation (3 of 11) of gi-1...    28  6.5
GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-1...    28  6.5
GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-1427...    28  6.5
GI-14270686_2 gi-14270686_2.seq Continuation (2 of 9) of gi-1427...    28  6.5
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  6.5

>GI-6862570_2 gi-6862570_2.seq Continuation (2 of 6) of gi-6862570 from
             base 100001
          Length = 110000

 Score = 31.8 bits (63), Expect = 0.37
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1 / -2

                                
Query: 586   SCCLLCATADDSSDLWRPV 642
             +CC  C   DDSS  WR V
Sbjct: 56110 NCCFCCFIVDDSSSFWRSV 56054


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
            chromosome VI, complete ch
          Length = 270148

 Score = 29.9 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 15/41 (35%)
 Frame = -2 / +3

                                                     
Query: 887  PRHGLRTASLRGPPIGRDSXPHTAPASPACLPPPRWPATHH 765
            P H L       P I  +S P      P C  P  +P  HH
Sbjct: 4893 PPHSLPCLPTTNPQIHHNSYPPITHIQPHCHLPCHYPTIHH 5015


 Score = 27.2 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = -2 / +1

                                
Query: 821   TAPASPACLPPPRWPATHH 765
             +APA P  + PP+ P  HH
Sbjct: 21040 SAPAIPPAIGPPQAPHVHH 21096


>GI-14318439_02 gi-14318439_02.seq Continuation (2 of 11) of gi-14318439
             from base 100001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.8
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = -2 / -2

                                             
Query: 650   DTATGRQRSELSSAVAHRRQQEYVDHWHNNEK 555
             D ++   RS+   A    R    +DHWH+ E+
Sbjct: 92653 DLSSVDSRSDKEEAATQSRLNSLIDHWHDYER 92558


>GI-7839148_11 gi-7839148_11.seq Continuation (11 of 16) of
           gi-7839148 from base 1000001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -2 / +3

                            
Query: 827 PHTAPASPACLPPPRWP 777
           P+ APA P    PP+WP
Sbjct: 543 PNAAPALPPSFVPPQWP 593


>GI-7839148_10 gi-7839148_10.seq Continuation (10 of 16) of gi-7839148
              from base 900001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -2 / +1

                               
Query: 827    PHTAPASPACLPPPRWP 777
              P+ APA P    PP+WP
Sbjct: 100543 PNAAPALPPSFVPPQWP 100593


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
              chromosome I, complete chro
          Length = 230203

 Score = 29.0 bits (57), Expect = 2.5
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2 / +3

                          
Query: 869    CVVRAAGWLRCC 904
              CVVRA GWLR C
Sbjct: 112443 CVVRAPGWLRPC 112478


 Score = 23.1 bits (44), Expect(2) = 3.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1 / -1

                          
Query: 739    GGAWEGRGXWWV 774
              GG W+ R  WW+
Sbjct: 114376 GGPWKYRHPWWM 114341


 Score = 22.6 bits (43), Expect(2) = 3.8
 Identities = 7/19 (36%), Positives = 10/19 (51%)
 Frame = +2 / -2

                                 
Query: 863    WPCVVRAAGWLRCCASLCA 919
              WPC+      LR  ++ CA
Sbjct: 114300 WPCMAERRRLLRVHSATCA 114244


>GI-6323989_1 gi-6323989_1.seq Continuation (1 of 8) of gi-6323989 from
             base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -2 / -1

                                  
Query: 623   ELSSAVAHRRQQEYVDHWHNN 561
             E+++ + ++    Y+ H+HNN
Sbjct: 40331 EMTAQIPYQHSSGYISHFHNN 40269


>GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-7276232 from
             base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2 / +3

                                              
Query: 668   GTTAWADTATGRQRSELSSAVAHRRQQEYVDHW 570
             GTTA  +TAT   RS  S++ A R+   + D +
Sbjct: 10770 GTTAATNTATTSHRSTNSTSSATRQYSSFEDQY 10868


>GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-6862570 from
             base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3 / -2

                                                
Query: 555   FLIVMPMIYIFLLSPVRDCRRQLRSLAAGRGVCPC 659
             FL    + Y+ L SP+R+   Q  SL    G  P 
Sbjct: 97291 FLYAKSLHYVMLRSPIREYTNQYLSLRIFYGSYPH 97187


>GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-14627172
             from base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3 / +1

                                
Query: 292   RCKDAPPRXRXGSQKKRQD 236
             +CK APP+ +   +KK +D
Sbjct: 61360 KCKSAPPKEKKAEKKKEKD 61416


>GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-14389432
             from base 700001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1 / -3

                                        
Query: 550   LCFSLLCQ*STYSCCLLCATADDSSDL 630
             LC + L    + SC +  A ADD  D 
Sbjct: 67110 LCKNCLFVTGSVSCLICAAVADDEDDR 67030


>GI-14389432_03 gi-14389432_03.seq Continuation (3 of 11) of gi-14389432
             from base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2 / +3

                                
Query: 845   IGRDSXPHTAPASPACLPP 789
             IG++S  H     PACLP 
Sbjct: 60936 IGQNSITHINNTEPACLPS 60992


>GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-14389432
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1 / +1

                           
Query: 868   VRSPCRGVAPLLCL 909
             +RSPC G  P+LCL
Sbjct: 20017 LRSPCYGKTPILCL 20058


>GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-14270686
             from base 600001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2 / -3

                            
Query: 557   SHCYANDLHILAVSC 601
             SHC++ D  ILAV+C
Sbjct: 86481 SHCFSQDKSILAVTC 86437


>GI-14270686_2 gi-14270686_2.seq Continuation (2 of 9) of gi-14270686
             from base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = +3 / +2

                                    
Query: 555   FLIVMPMIYIFLLSPVRDCRRQL 623
             FL++   IYI +LS +  CRR +
Sbjct: 24632 FLVISLRIYIIILSIIDGCRRSI 24700


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
              chromosome III, complete c
          Length = 316613

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2 / -3

                                  
Query: 827    PHTAPASPACLPPPRWPATH 768
              P   P+  A  PP  WP TH
Sbjct: 238242 PKVRPSKLANAPPSEWPVTH 238183


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15911603
Number of Sequences: 122
Number of extensions: 133087
Number of successful extensions: 11002
Number of sequences better than 10.0: 16
length of query: 321
length of database: 4,402,102
effective HSP length: 44
effective length of query: 276
effective length of database: 4,396,734
effective search space: 1213498584
effective search space used: 1213498584
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)