TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_B02_C03ZS5.seq
         (969 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-1...    29  1.8
GI-6324971_05 gi-6324971_05.seq Continuation (5 of 10) of gi-632...    29  2.5
GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-1...    29  3.4
GI-14389432_10 gi-14389432_10.seq Continuation (10 of 11) of gi-...    23  4.3
GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-632...    28  4.7
GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-632...    28  4.7
GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae ...    26  5.8
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    28  6.5
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    28  6.5
GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-632...    28  6.5
GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-632...    28  6.5
GI-6323501_04 gi-6323501_04.seq Continuation (4 of 10) of gi-632...    28  6.5
GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-1...    28  6.5
GI-14277709_4 gi-14277709_4.seq Continuation (4 of 7) of gi-1427...    28  6.5
GI-7839148_09 gi-7839148_09.seq Continuation (9 of 16) of gi-783...    27  8.9
GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-783...    27  8.9
GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of gi-...    27  8.9

>GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-14318439
             from base 500001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2 / +1

                                     
Query: 893   SSFPSFYFLLILTLIYSFTILNNY 964
             +SFP   F L+LT +Y+F  + N+
Sbjct: 92953 TSFP*LLFCLLLTTLYTFDFIENF 93024


>GI-6324971_05 gi-6324971_05.seq Continuation (5 of 10) of gi-6324971
             from base 400001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1 / +3

                        
Query: 922   NTHPHLLIYNT 954
             NTHPHLL+Y T
Sbjct: 62319 NTHPHLLVYQT 62351


>GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-14389432
             from base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2 / -3

                               
Query: 893   SSFPSFYFLLILTLIYSF 946
             S FPS+  L+IL L+YSF
Sbjct: 70206 SFFPSYIVLIILILLYSF 70153


>GI-14389432_10 gi-14389432_10.seq Continuation (10 of 11) of
             gi-14389432 from base 900001
          Length = 110000

 Score = 23.1 bits (44), Expect(2) = 4.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3 / +2

                      
Query: 822   PHYFHFIYS 848
             PH+FH+ YS
Sbjct: 65144 PHHFHYYYS 65170


 Score = 22.6 bits (43), Expect(2) = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2 / +1

                                 
Query: 842   IFSTPILPLLFSLIYPPSSF 901
             +FSTPI+ L  SL +  +SF
Sbjct: 65164 LFSTPIILL*ISLSFALNSF 65223


>GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-6323501
             from base 700001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2 / -3

                                      
Query: 866   LLFSLIYPPSSFPSFYFLLILTLIY 940
             +LF L+Y P  F SF+ +++   IY
Sbjct: 62550 VLFILVYSPRDFFSFFIVILSECIY 62476


>GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-6323501
             from base 200001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2 / +2

                                     
Query: 893   SSFPSFYFLLILTLIYSFTILNNY 964
             SSF SF+F +++  +Y F +  +Y
Sbjct: 36638 SSFVSFFFFVLVFYVYYFLLFQSY 36709


>GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae
             mitochondrion, complete gen
          Length = 85779

 Score = 26.3 bits (51), Expect(2) = 5.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2 / +2

                               
Query: 911   YFLLILTLIYSFTILNNY 964
             YFLLIL L+ +F I+ NY
Sbjct: 54116 YFLLILFLLITF*IIINY 54169


 Score = 18.9 bits (35), Expect(2) = 5.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3 / +1

                         
Query: 807   YYFSPPHYFHFI 842
             YYF+  + F FI
Sbjct: 54022 YYFTY*Y*FRFI 54057


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
             chromosome I, complete chro
          Length = 230203

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = -3 / +3

                                         
Query: 709   KRVGKGGERRIGEL*VGNRNERVRKGGR 626
             ++VGK G R+IGE   G   +R +  GR
Sbjct: 76986 RKVGKRGRRKIGERRGGKIGQRRKNEGR 77069


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
             chromosome VI, complete ch
          Length = 270148

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (71%)
 Frame = +2 / -1

                               
Query: 866   LLFSLIYPPSSFPSFYFL 919
             L F+ +YPP+ +P F F+
Sbjct: 58462 LAFAKVYPPTIYPEFLFM 58409


>GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-6323501
             from base 800001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2 / -1

                                      
Query: 869   LFSLIYPPSSFPSFYFLLILTLIYS 943
             +F L  PP  FPS+YF     + YS
Sbjct: 75929 IFHLTSPPRVFPSYYFPACPLISYS 75855


>GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-6323501
            from base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = +2 / -2

                                         
Query: 869  LFSLIYPPSSFPSFYFLLILTLIYSFTIL 955
            +F  IYP   +  F+F+  + LIY+F+I+
Sbjct: 6304 IFCSIYPLF*WAFFFFIFRVQLIYTFSIV 6218


>GI-6323501_04 gi-6323501_04.seq Continuation (4 of 10) of gi-6323501 from
              base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = +2 / -1

                                           
Query: 869    LFSLIYPPSSFPSFYFLLILTLIYSFTIL 955
              +F  IYP   +  F+F+  + LIY+F+I+
Sbjct: 106304 IFCSIYPLF*WAFFFFIFRVQLIYTFSIV 106218


>GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-14389432
             from base 700001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = +2 / +2

                             
Query: 860   LPLLFSLIYPPSSFPS 907
             LPLL  +++PP  FPS
Sbjct: 91001 LPLLLQILHPPHPFPS 91048


>GI-14277709_4 gi-14277709_4.seq Continuation (4 of 7) of gi-14277709
             from base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2 / +3

                                
Query: 872   FSLIYPPSSFPSFYFLLIL 928
             FSLIY  S +PSF ++++L
Sbjct: 21183 FSLIYICSEYPSFIYIVLL 21239


>GI-7839148_09 gi-7839148_09.seq Continuation (9 of 16) of gi-7839148
             from base 800001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2 / -1

                                         
Query: 863   PLLFSLIYPPSSFPSFYFLLILTLIYSF 946
             P+L + I+    FP+F+F   L L++ F
Sbjct: 35687 PILAARIFITQLFPTFFFFRFLFLLFFF 35604


>GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-7839148
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3 / -2

                          
Query: 420   PHTIYHLYPSPHY 458
             PH + HLYP P+Y
Sbjct: 27745 PHEVCHLYP*PYY 27707


>GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of
             gi-14318439 from base 900001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3 / +3

                              
Query: 813   FSPPHYFHFIYSPPLFS 863
             F+PPH +H  Y  P+F+
Sbjct: 43170 FAPPHLYHRNYQIPVFA 43220


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 11551486
Number of Sequences: 122
Number of extensions: 80238
Number of successful extensions: 8120
Number of sequences better than 10.0: 17
length of query: 323
length of database: 4,402,102
effective HSP length: 44
effective length of query: 278
effective length of database: 4,396,734
effective search space: 1222292052
effective search space used: 1222292052
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)