TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_C04_E07ZS5.seq
         (889 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-1462...    32  0.25
GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-1427...    29  3.1
GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-686257...    28  5.9
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    27  7.8
GI-7839148_12 gi-7839148_12.seq Continuation (12 of 16) of gi-78...    27  8.1
GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-783...    27  8.1
GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-632398...    27  8.1
GI-14389432_06 gi-14389432_06.seq Continuation (6 of 11) of gi-1...    27  8.1
GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-1...    27  8.1
GI-14318439_08 gi-14318439_08.seq Continuation (8 of 11) of gi-1...    24  8.9

>GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-14627172
             from base 400001
          Length = 110000

 Score = 32.2 bits (64), Expect = 0.25
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3 / +3

                                                     
Query: 437   QGHKVAHKQLLIFAVVVSTERHDELVLKLANVRNALTELW 318
             +GHK+ +    I       + H+ ++L    ++N LTELW
Sbjct: 98454 EGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELW 98573


>GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-14277709
             from base 600001
          Length = 66445

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (56%)
 Frame = +2 / +3

                                  
Query: 425   PYALGEPFCPLALEQKFWSHP 487
             P+ + EP C LAL   FW  P
Sbjct: 44919 PFLMKEPLC*LALNFLFWKDP 44981


>GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-6862570 from
             base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.9
 Identities = 14/43 (32%), Positives = 17/43 (38%)
 Frame = +2 / -2

                                                        
Query: 185   RLGGPAARVGRGPWQMCYRDDLQGCAGIQRYRGGEAAQGCRGG 313
             R G P  R G    +   R   +G  G   +RGG      RGG
Sbjct: 82882 RSGAPGGRGGASMGRGGSRGGFRGGRGGSSFRGGRGGSSFRGG 82754


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
              chromosome I, complete chro
          Length = 230203

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -1 / -1

                                                   
Query: 544    CIHPTGRTGTKAEINEQSRGVRPELLFQGKRAERLPK 434
              C+ P  RT          R     L   GKRA R P+
Sbjct: 190801 CVCPARRTSRTGHDTSPPRDATWRLFASGKRARRDPE 190691


 Score = 24.4 bits (47), Expect(2) = 7.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1 / -3

                                           
Query: 154   SSGQRPPSNRSTWRTCCARRPRSLANVLSG 243
             S  + PPS       CC   P  +A  L+G
Sbjct: 93380 SLAEYPPSRGFDSTLCCGNGPLKVATTLNG 93291


 Score = 19.8 bits (37), Expect(2) = 7.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2 / -2

                      
Query: 347   WRASARVHR 373
             WR S R+HR
Sbjct: 93285 WRESRRLHR 93259


>GI-7839148_12 gi-7839148_12.seq Continuation (12 of 16) of gi-7839148
             from base 1100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +3 / +2

                                           
Query: 21    THHLCVXSEPRGPKPPXLPSGAAVAPMATV 110
             +HH  + ++PRG K     S A  AP  T+
Sbjct: 72113 SHHDLLLNQPRGGKKNKKKSNAIYAPCTTI 72202


>GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-7839148
             from base 500001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +2 / +2

                                          
Query: 206   RVGRGPWQMCYRDDLQGCAGIQRYRGGEA 292
             R+GR  W +   DD++    I RY  GE+
Sbjct: 54755 RLGRTAWDLNRNDDVRHAFQIARYNLGES 54841


>GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-6323989 from
             base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3 / -3

                                      
Query: 389   VSTERHDELVLKLANVRNALTELWL 315
             + T    + V+KL+N+R   T LWL
Sbjct: 86217 IQTTLFPKAVVKLSNIRCGFTSLWL 86143


>GI-14389432_06 gi-14389432_06.seq Continuation (6 of 11) of gi-14389432
             from base 500001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 13/43 (30%), Positives = 19/43 (43%)
 Frame = -1 / +2

                                                        
Query: 382   RRGTMNSC*SSPMSAMRSRNCGSATPTSLSRFTATVALDSRTA 254
             + G   +C S      R+  C SATP   ++  A    DS +A
Sbjct: 39203 KAGLFRACSSCSFCKARALGCSSATPKPANKSAALFKSDSISA 39331


>GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-14318439
             from base 600001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.1
 Identities = 14/30 (46%), Positives = 15/30 (49%)
 Frame = +1 / -2

                                           
Query: 130   RLQGRSWSSSGQRPPSNRSTWRTCCARRPR 219
             R  G SWSSS  R  S    WR  C+ R R
Sbjct: 77515 RRWGWSWSSSRLRLLS*ECWWRRWCSTRRR 77426


 Score = 27.2 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3 / +2

                                              
Query: 42    SEPRGPKPPXLPSGAAVAPMATVGHPAGQSTSG 140
             S P  P PP LPS  + AP         Q  SG
Sbjct: 77390 SAPSAPIPPTLPSTTSAAPPPPPAFLTQQPQSG 77488


>GI-14318439_08 gi-14318439_08.seq Continuation (8 of 11) of gi-14318439
             from base 700001
          Length = 110000

 Score = 24.0 bits (46), Expect(2) = 8.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3 / -3

                            
Query: 24    HHLCVXSEPRGPKPP 68
             HHLC   E   P PP
Sbjct: 60372 HHLCCHFEQVSPPPP 60328


 Score = 20.3 bits (38), Expect(2) = 8.9
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1 / -3

                                 
Query: 169   PPSNRSTWRTCCARRPRSLA 228
             PP N  TW    A   R LA
Sbjct: 60333 PPPNLHTWPETVASAVRFLA 60274


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15658927
Number of Sequences: 122
Number of extensions: 184863
Number of successful extensions: 11419
Number of sequences better than 10.0: 10
length of query: 296
length of database: 4,402,102
effective HSP length: 44
effective length of query: 251
effective length of database: 4,396,734
effective search space: 1103580234
effective search space used: 1103580234
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)