TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_C06_E11ZS5.seq
         (927 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14389432_07 gi-14389432_07.seq Continuation (7 of 11) of gi-1...    31  0.49
GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae ...    31  0.67
GI-7839148_04 gi-7839148_04.seq Continuation (4 of 16) of gi-783...    30  1.3
GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-783...    29  1.7
GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-1...    29  1.7
GI-14277709_6 gi-14277709_6.seq Continuation (6 of 7) of gi-1427...    29  2.4
GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-1427...    29  2.4
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    29  3.3
GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-783...    29  3.3
GI-6324971_07 gi-6324971_07.seq Continuation (7 of 10) of gi-632...    29  3.3
GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-632...    29  3.3
GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-632...    29  3.3
GI-6323501_04 gi-6323501_04.seq Continuation (4 of 10) of gi-632...    29  3.3
GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-727623...    27  4.1
GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-686257...    28  4.5
GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-727623...    28  6.2
GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-1...    28  6.2
GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of gi-...    28  6.2
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    27  8.5
GI-14318439_11 gi-14318439_11.seq Continuation (11 of 11) of gi-...    27  8.5
GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-632398...    27  8.5
GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-1462...    27  8.5

>GI-14389432_07 gi-14389432_07.seq Continuation (7 of 11) of gi-14389432
             from base 600001
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.49
 Identities = 15/37 (40%), Positives = 20/37 (53%)
 Frame = -2 / -2

                                                  
Query: 782   SRGRGTMPSLSQSARSHPLGTLLCRSNSISCRWCGAT 672
             SR   ++ S    A + P  TL+C+SN  SCR   AT
Sbjct: 65680 SRSLRSLSSSPAKALTRPENTLICKSNYESCRKAVAT 65570


>GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae
             mitochondrion, complete gen
          Length = 85779

 Score = 30.8 bits (61), Expect = 0.67
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2 / +2

                                                   
Query: 47    SILAFLLHAIQFAFTSLVYPALILGYMGQAAYLTKHHD 160
             S +  LLH+ +FA   LV PALI G+  Q  Y + +++
Sbjct: 18908 SFI*MLLHSDRFATLLLVMPALIGGFGNQKRYESNNNN 19021


>GI-7839148_04 gi-7839148_04.seq Continuation (4 of 16) of gi-7839148
             from base 300001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1 / -1

                                            
Query: 783   IPGTRDHAKPVAEREKPSIGDLVVQVELDFL 691
             +P T  + KP+ +R K  +  L+ ++ LD+L
Sbjct: 80414 VPATFSNVKPLYQRRKSKVSPLLEKIVLDYL 80322


>GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-7839148
             from base 200001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.7
 Identities = 15/58 (25%), Positives = 28/58 (47%)
 Frame = +2 / -2

                                                                       
Query: 254   GSQAIISGTFSIINQSQALSCFPRVKVVHTSAKVHGQIYIPEINWMLMVLCIAVTVGF 427
             G ++ IS  + I+ +S+ L        +HT   ++  IYI    ++ M   + + VGF
Sbjct: 26959 GKRSAISSYYEILKRSKTLHSSVEYTQLHTHTYIYIHIYIYIYIYIYMYTLMYLLVGF 26786


>GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-14318439
             from base 600001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1 / +1

                                   
Query: 58    LSPTCNPVCFYFFGVPCTDPRI 123
             LS   N + F+FFG  C   RI
Sbjct: 25960 LSFQANDIFFFFFGCSCNSRRI 26025


>GI-14277709_6 gi-14277709_6.seq Continuation (6 of 7) of gi-14277709 from
              base 500001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 16/21 (75%)
 Frame = -3 / +1

                                   
Query: 403    EHHEHPVDLRDVDLAMDLRRC 341
              EH+EH +D  + D+ +++RRC
Sbjct: 102496 EHYEHTLDKVEDDIDINIRRC 102558


>GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-14277709
            from base 600001
          Length = 66445

 Score = 29.0 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 16/21 (75%)
 Frame = -3 / +3

                                 
Query: 403  EHHEHPVDLRDVDLAMDLRRC 341
            EH+EH +D  + D+ +++RRC
Sbjct: 2496 EHYEHTLDKVEDDIDINIRRC 2558


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
             chromosome VI, complete ch
          Length = 270148

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2 / +1

                                  
Query: 476   VMLVTTCLTSLVMMLCWHRPP 538
             ++ +  CLT++ MM+ W R P
Sbjct: 96391 LLFLKMCLTTMTMMMTWRRTP 96453


>GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-7839148
             from base 500001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (47%)
 Frame = -1 / +3

                                          
Query: 684   VWCHTNMTAXRMSARRSGTHAPXRNLVSD 598
             +WCHT  +A R S R S      R+   D
Sbjct: 93522 IWCHTGKSAVRRSGRGSDYRG*LRSYYDD 93608


>GI-6324971_07 gi-6324971_07.seq Continuation (7 of 10) of gi-6324971
             from base 600001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -2 / -1

                                   
Query: 854   GVVYESVKSCLAPPKVKSGLKK 789
             G++YE V S  APP+  S LKK
Sbjct: 38018 GLIYEVVTSASAPPENASELKK 37953


>GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-6323501
             from base 800001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2 / -2

                                    
Query: 311   SCFPRVKVVHTSAKVHGQIYIPE 379
             +C+P   + HT+   H  IYI E
Sbjct: 32125 TCYPATSLFHTNTLTHSHIYIYE 32057


>GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-6323501
             from base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +1 / +2

                                          
Query: 16    LPLTATMPGYXHTGLSPTCNPVCFYFFGV 102
             LP T T  G+ +   S   + +CF+FF V
Sbjct: 42170 LPCTVTYKGFFNNE*SRNLHFICFFFFAV 42256


>GI-6323501_04 gi-6323501_04.seq Continuation (4 of 10) of gi-6323501
             from base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (55%)
 Frame = +1 / -1

                                    
Query: 268   HQRHLLHHQPEPGPQLLPAGEGR 336
             H RH  HH     P+LLP  +GR
Sbjct: 54221 HHRHHHHHHHRLPPRLLPHHQGR 54153


>GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-7276232 from
             base 100001
          Length = 110000

 Score = 26.7 bits (52), Expect(2) = 4.1
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2 / -1

                                                                
Query: 368   YIPEINWMLMVLCIAVTVGFRDTKHMGNASGLAVITVMLVTTCLTSLVMML 520
             +I  I+W++ +  I     F +   + +A  + ++ VM VTT  T L+ ++
Sbjct: 99338 FIS*IHWIIFIFIIHFHEIFSNLYILISAISVLLLAVMTVTTITTKLLNLI 99186


 Score = 18.9 bits (35), Expect(2) = 4.1
 Identities = 6/7 (85%), Positives = 7/7 (99%)
 Frame = +2 / -1

                    
Query: 353   VHGQIYI 373
             VHGQIY+
Sbjct: 99458 VHGQIYM 99438


>GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-6862570 from
             base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2 / -1

                                   
Query: 848   VYESVKSCLAPPKVKSGLKKAQ 783
             V+   K+CL P K+K+GLK  Q
Sbjct: 74915 VHGQHKTCLVPKKLKAGLKDYQ 74850


>GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-7276232 from
             base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.2
 Identities = 9/27 (33%), Positives = 13/27 (47%)
 Frame = +1 / +3

                                        
Query: 40    GYXHTGLSPTCNPVCFYFFGVPCTDPR 120
             G+   G SP    +  +FF  PC+  R
Sbjct: 86649 GFARAGSSPAVVVIFLFFFNFPCSSDR 86729


>GI-14389432_08 gi-14389432_08.seq Continuation (8 of 11) of gi-14389432
             from base 700001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1 / +2

                               
Query: 268   HQRHLLHHQPEPGPQLLP 321
             HQ+ LLH QP P   LLP
Sbjct: 91148 HQQSLLHLQPPPHHPLLP 91201


>GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of
             gi-14318439 from base 900001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2 / +2

                                  
Query: 569   RSIEALYFSASLTKFLXGAWV 631
             ++I ALY S SLTK L  +W+
Sbjct: 40649 KAIAALYLSFSLTKNLISSWM 40711


 Score = 27.2 bits (53), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2 / +3

                                            
Query: 773    RGTMPSLSQSARSHPLGTLLCRSNSISCRW 684
              RG   ++S  +R   LGT + R  S+SCR+
Sbjct: 107244 RGIRMTISAKSRHLALGTDMTRKFSLSCRF 107333


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
             chromosome I, complete chro
          Length = 230203

 Score = 27.2 bits (53), Expect = 8.5
 Identities = 9/38 (23%), Positives = 21/38 (54%)
 Frame = +2 / -1

                                                   
Query: 308   LSCFPRVKVVHTSAKVHGQIYIPEINWMLMVLCIAVTV 421
             +SC  ++ +   +A  HG +Y+P+I    + +   ++V
Sbjct: 40894 VSCL*KLTITFFTATYHGYLYLPQIIHCFVTIITGLSV 40781


>GI-14318439_11 gi-14318439_11.seq Continuation (11 of 11) of
            gi-14318439 from base 1000001
          Length = 91284

 Score = 27.2 bits (53), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2 / +2

                                          
Query: 773  RGTMPSLSQSARSHPLGTLLCRSNSISCRW 684
            RG   ++S  +R   LGT + R  S+SCR+
Sbjct: 7244 RGIRMTISAKSRHLALGTDMTRKFSLSCRF 7333


>GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-6323989 from
             base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3 / -2

                                  
Query: 136   SLTHVS*DQCRVHQRSKSKLD 74
             SL H   DQCR+ +  KSK++
Sbjct: 59845 SLVHFRYDQCRLSRAGKSKIE 59783


>GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-14627172
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3 / +1

                                     
Query: 766   PCQACRRAREAIHWGPCCAGRTRF 695
             PCQ         HWG   A RTRF
Sbjct: 84430 PCQR*FTEYRCFHWGTLAALRTRF 84501


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 20615681
Number of Sequences: 122
Number of extensions: 252660
Number of successful extensions: 16289
Number of sequences better than 10.0: 22
length of query: 309
length of database: 4,402,102
effective HSP length: 44
effective length of query: 264
effective length of database: 4,396,734
effective search space: 1160737776
effective search space used: 1160737776
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)