TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_D01_G01ZS5.seq
         (885 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-632...   207  5e-54
GI-7839148_14 gi-7839148_14.seq Continuation (14 of 16) of gi-78...   206  7e-54
GI-7276232_3 gi-7276232_3.seq Continuation (3 of 6) of gi-727623...    32  0.24
GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-727623...    31  0.46
GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-632398...    30  0.87
GI-6323501_06 gi-6323501_06.seq Continuation (6 of 10) of gi-632...    29  1.6
GI-14318434_02 gi-14318434_02.seq Continuation (2 of 11) of gi-1...    29  1.6
GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-1462...    29  2.3
GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-1427...    29  3.1
GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-1427...    29  3.1
GI-14277709_1 gi-14277709_1.seq Continuation (1 of 7) of gi-1427...    28  4.3
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  4.3
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    28  5.8
GI-6323501_01 gi-6323501_01.seq Continuation (1 of 10) of gi-632...    28  5.8
GI-14277709_2 gi-14277709_2.seq Continuation (2 of 7) of gi-1427...    28  5.8
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    28  5.8
GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of gi-1...    27  8.0

>GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-6323501
             from base 200001
          Length = 110000

 Score =  207 bits (446), Expect = 5e-54
 Identities = 77/123 (62%), Positives = 104/123 (83%)
 Frame = +3 / -3

                                                                         
Query: 141   LRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVH 320
             + +LNTNVDG  KI++ALT+IKGVGRR+SN+VCKKAD+D++KRAGEL+ EE++R++ ++ 
Sbjct: 23385 ISLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 23206

                                                                         
Query: 321   NPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVR 500
             NP  +K+P WFLNR+ D  DG+    ++N V+ KLRDDLERLKKIR HRG+RH+WG+RVR
Sbjct: 23205 NPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVR 23026

                
Query: 501   GQH 509
             GQH
Sbjct: 23025 GQH 23017


 Score = 78.0 bits (164), Expect = 4e-15
 Identities = 41/124 (33%), Positives = 66/124 (53%)
 Frame = -2 / +1

                                                                         
Query: 515   LGVLTTDTHAPVVPQTAMVPDLLEPLKVIPELHVHGVGHDLGEPPVLVILLPVEEPIRHL 336
             LGVLT++T  P V  T +  DLL   +VI +L    V   +    +  ++L V EP   L
Sbjct: 23011 LGVLTSNT*TPEVSNTTVGSDLL*SFQVISQLGFDVVSQSVVVLTISNVVLTV*EPGWDL 23190

                                                                         
Query: 335   ELARVVHHRHQTVHLLRGKLSGPLVHVDVGLLADDVGEAAAHTLDGGQREHDLLLTIDVG 156
              ++ V+H    +     G+ +  LV +++ LL D VG    +TL+ GQ  ++  +TID+G
Sbjct: 23191 VMSWVLHDLDNSFQFFLGQFTSSLVQINISLLTDQVGVTTTNTLNSGQSVNNFNVTIDIG 23370

                 
Query: 155   VEHT 144
             V+ T
Sbjct: 23371 VQQT 23382


 Score = 77.6 bits (163), Expect = 5e-15
 Identities = 43/88 (48%), Positives = 49/88 (54%)
 Frame = -3 / +2

                                                                         
Query: 412   TALDTTWENLPSL*SFFLLRNQSGTLNWRGLCTTXXXXXXXXXXXSPALLFMSMSAFLQT 233
             T L   W +LPS+ SF   +NQ+G L   G C             SPALL  S SAFLQT
Sbjct: 23114 TLLAKVW*SLPSVMSF*RFKNQAGIL**VGFCMIWTILSNSSWVNSPALLCKSTSAFLQT 23293

                                         
Query: 232   MLEKRRPTPLMEVSANMIFCLPSTLVLS 149
              LE RRPTPL+ V A  I  LPSTLV +
Sbjct: 23294 KLE*RRPTPLIVVKA*TILMLPSTLVFN 23377


>GI-7839148_14 gi-7839148_14.seq Continuation (14 of 16) of gi-7839148
             from base 1300001
          Length = 110000

 Score =  206 bits (445), Expect = 7e-54
 Identities = 77/121 (63%), Positives = 103/121 (84%)
 Frame = +3 / +2

                                                                         
Query: 147   VLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNP 326
             +LNTNVDG  KI++ALT+IKGVGRR+SN+VCKKAD+D++KRAGEL+ EE++R++ ++ NP
Sbjct: 60395 LLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60574

                                                                         
Query: 327   RQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQ 506
               +K+P WFLNR+ D  DG+    ++N V+ KLRDDLERLKKIR HRG+RH+WG+RVRGQ
Sbjct: 60575 THYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQ 60754

              
Query: 507   H 509
             H
Sbjct: 60755 H 60757


 Score = 81.7 bits (172), Expect = 3e-16
 Identities = 40/124 (32%), Positives = 66/124 (52%)
 Frame = -2 / -2

                                                                         
Query: 515   LGVLTTDTHAPVVPQTAMVPDLLEPLKVIPELHVHGVGHDLGEPPVLVILLPVEEPIRHL 336
             LGVLT++T  P V  T M  D L   +VI +     V   +    +  ++L V+EP    
Sbjct: 60763 LGVLTSNTQTPEVSDTTMSSDFL*SFQVISQFGFDVVSQSVVVLTISDVILTVQEPSWDF 60584

                                                                         
Query: 335   ELARVVHHRHQTVHLLRGKLSGPLVHVDVGLLADDVGEAAAHTLDGGQREHDLLLTIDVG 156
              ++ V+H+ + +     G+ +  LV +++ LL D VG    +TLD GQ  +DL +T++V 
Sbjct: 60583 VVSWVLHNLNNSFQFFLGQFTSSLV*INISLLTDQVGVTTTNTLDSGQSVNDLNVTVNVS 60404

                 
Query: 155   VEHT 144
             V+ T
Sbjct: 60403 VQQT 60392


 Score = 77.6 bits (163), Expect = 5e-15
 Identities = 44/91 (48%), Positives = 50/91 (54%)
 Frame = -3 / -3

                                                                         
Query: 412   TALDTTWENLPSL*SFFLLRNQSGTLNWRGLCTTXXXXXXXXXXXSPALLFMSMSAFLQT 233
             T L   W +LPS+ SF   +NQ+G L   G C             SPALL  S SAFLQT
Sbjct: 60660 TLLAKVW*SLPSVMSF*RFKNQAGIL**VGFCII*TILSNSSWVNSPALLCKSTSAFLQT 60481

                                            
Query: 232   MLEKRRPTPLMEVSANMIFCLPSTLVLSTRR 140
              LE RRPTPL+ V A  I  LPSTLV +  R
Sbjct: 60480 KLE*RRPTPLIVVKA*TILMLPSTLVFNKLR 60388


 Score = 34.1 bits (68), Expect = 0.069
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +1 / +3

                                                    
Query: 430   MTLRGSRRSGTIAVCGTTGACVSVVSTPRLQAGEERLLV 546
             MT +  R+S  I V  T+G CV  V+TPR    EE  L+
Sbjct: 60678 MTWKD*RKSELIVVSDTSGVCVLEVNTPRPLVEEELKLI 60794


>GI-7276232_3 gi-7276232_3.seq Continuation (3 of 6) of gi-7276232 from
             base 200001
          Length = 110000

 Score = 32.2 bits (64), Expect = 0.24
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = -3 / -2

                                         
Query: 178   FCLPSTLVLSTRRMCWNSSPAISDMAAV 95
             +CL S  V S   +CWNS P ++  A V
Sbjct: 31648 YCLNSNSVYSNSCLCWNSRPLVAVRAVV 31565


 Score = 27.2 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2 / +1

                                      
Query: 542   WCLQEAISCLTKILHSFVLLCWSIS 616
             WC  +  S  T+ L    + CWSIS
Sbjct: 95722 WCHYQRQSTRTRFLLGIFVSCWSIS 95796


>GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-7276232 from
             base 1
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.46
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = +2 / -1

                                          
Query: 554   EAISCLTKILHSFVLLCWSISRILRSVLV 640
             EAISCL+K+  S     W +S +L   LV
Sbjct: 49775 EAISCLSKVCRSRTAQSWGLSTLLSMCLV 49689


>GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-6323989 from
             base 400001
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.87
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3 / -1

                                          
Query: 423   LRDDLERLKKIRNHRGLRHYWGVRVRGQH 509
             ++D++   +KI ++ G+RH   + VRGQH
Sbjct: 76394 VKDNIALKRKIGSYSGMRHTLHLPVRGQH 76308


>GI-6323501_06 gi-6323501_06.seq Continuation (6 of 10) of gi-6323501
             from base 500001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1 / +2

                                    
Query: 721   HVELFTVVLPWALSHLMVWHILS 789
             H+ +F+ V+PW      +WH +S
Sbjct: 35246 HIPVFSQVMPWCYQDGALWHFVS 35314


>GI-14318434_02 gi-14318434_02.seq Continuation (2 of 11) of gi-14318434
             from base 100001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.6
 Identities = 10/35 (28%), Positives = 19/35 (53%)
 Frame = +3 / +1

                                                
Query: 378   DGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHY 482
             D  FS V S ++D   R+D++ L  +  ++G   +
Sbjct: 58105 DDAFSNVKSLSMDRWTREDIDELVSLGGNKGNARF 58209


>GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-14627172
             from base 600001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3 / +1

                                       
Query: 187   NMIFCLPSTLVLSTRRMCWNSSPAIS 110
             +M+  +P  L LS RRM WN  P+++
Sbjct: 52189 SMLLRVPLLLTLSRRRMNWNVLPSLT 52266


>GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-14270686
            from base 600001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2 / +3

                                  
Query: 320  VHHRHQTVHLLRGKLSGPLVHV 255
            VHH +Q  HLL G L  PLV V
Sbjct: 9627 VHH*NQN*HLLGGSLDCPLVPV 9692


>GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-14270686 from
              base 500001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2 / +1

                                    
Query: 320    VHHRHQTVHLLRGKLSGPLVHV 255
              VHH +Q  HLL G L  PLV V
Sbjct: 109627 VHH*NQN*HLLGGSLDCPLVPV 109692


>GI-14277709_1 gi-14277709_1.seq Continuation (1 of 7) of gi-14277709
            from base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3 / +3

                                        
Query: 723  C*TLHSCIAMGFKSFDGLAHFVQKKKKT 806
            C*T+ SCI  GF+ F  + H   K   +
Sbjct: 3642 C*TVFSCIIFGFRPFIDIFHSFVKSSSS 3725


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
              chromosome III, complete c
          Length = 316613

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -2 / +3

                                                        
Query: 440    LKVIPELHVHGVGHDLGEPPVLVILLPVEEPIRHLELARVVH 315
              L ++     H    D   P      LP+  P+RH  L  ++H
Sbjct: 204336 LNILNNTQSHPSNSDCCFPQYSAFPLPLPLPLRHFRLPLLLH 204461


 Score = 27.2 bits (53), Expect = 8.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3 / -2

                                     
Query: 205   LMEVSANMIFCLPSTLVLSTRRMC 134
             L+++  N++ C+P +LVL  + +C
Sbjct: 66958 LLKLKPNLVSCVPDSLVLLKKLVC 66887


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
              chromosome VI, complete ch
          Length = 270148

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2 / -2

                                   
Query: 506    AHQDYRQERKDCWCLQEAISC 568
              AHQDYR E   C  LQ   SC
Sbjct: 101016 AHQDYR*ESVPCNSLQGDFSC 100954


>GI-6323501_01 gi-6323501_01.seq Continuation (1 of 10) of gi-6323501
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 11/35 (31%), Positives = 19/35 (53%)
 Frame = -2 / +1

                                                
Query: 362   PVEEPIRHLELARVVHHRHQTVHLLRGKLSGPLVH 258
             P+E  IR  + A + H R +   +L+   SG ++H
Sbjct: 47641 PIEIDIRITKTASIPHERPEEQSILKEYTSGDIIH 47745


>GI-14277709_2 gi-14277709_2.seq Continuation (2 of 7) of gi-14277709
             from base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2 / +2

                                          
Query: 350   PIRHLELARVVHHRHQTVHLLRGKLSGPL 264
             P +  +L  +VHH H+T   L+  LSG L
Sbjct: 64577 PWQQPQLVTIVHHDHETRCQLKFHLSGSL 64663


 Score = 27.2 bits (53), Expect = 8.0
 Identities = 8/22 (36%), Positives = 13/22 (58%)
 Frame = -2 / -1

                                   
Query: 674   SRAKHHPR*SSKQEHSLRFWKW 609
             S  ++HP+  S Q+H   +W W
Sbjct: 70445 SGRRYHPQIQSTQDHYCHWWLW 70380


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686
             from base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2 / +2

                                  
Query: 692   EPLIYWILNXMLNSSQLYCHG 754
             E L++W+L  M +  QLY HG
Sbjct: 92957 ECLLHWLLLFMTDYMQLYTHG 93019


>GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of gi-14318439
             from base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1 / -1

                                    
Query: 685   GSGTFNILDLEXHVELFTVVLPW 753
             GSGTFN +  + H  +    +PW
Sbjct: 28328 GSGTFNSIMTKKHFRIIQEEMPW 28260


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 21174421
Number of Sequences: 122
Number of extensions: 271550
Number of successful extensions: 17352
Number of sequences better than 10.0: 17
length of query: 295
length of database: 4,402,102
effective HSP length: 44
effective length of query: 250
effective length of database: 4,396,734
effective search space: 1099183500
effective search space used: 1099183500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)