TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_E06_I11ZS5.seq
         (945 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-632201...    35  0.039
GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-1...    31  0.50
GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-783...    30  1.3
GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-1462...    30  1.3
GI-14627172_6 gi-14627172_6.seq Continuation (6 of 8) of gi-1462...    30  1.3
GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-783...    29  1.8
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    28  2.1
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    28  4.6
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  4.6
GI-6862570_4 gi-6862570_4.seq Continuation (4 of 6) of gi-686257...    28  6.3
GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-632201...    28  6.3
GI-14277709_1 gi-14277709_1.seq Continuation (1 of 7) of gi-1427...    28  6.3
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    28  6.3
GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-632398...    27  8.7
GI-6322016_1 gi-6322016_1.seq Continuation (1 of 5) of gi-632201...    27  8.7
GI-14389432_03 gi-14389432_03.seq Continuation (3 of 11) of gi-1...    27  8.7
GI-14318434_10 gi-14318434_10.seq Continuation (10 of 11) of gi-...    27  8.7
GI-14318434_08 gi-14318434_08.seq Continuation (8 of 11) of gi-1...    27  8.7

>GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-6322016 from
             base 200001
          Length = 110000

 Score = 35.0 bits (70), Expect = 0.039
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2 / +1

                                              
Query: 725   FFWLGFVLSRYTSLATPFFPNVWVFFSHSLHFL 823
             F++L   LS  T    P FP VW+ F HSL  L
Sbjct: 60370 FYYLATFLSLVTLYFYPKFPIVWIIFGHSLRRL 60468


>GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-14318439
             from base 1
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.50
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = +1 / +1

                                                        
Query: 793   GFFLAFSPLFGSMPPPSVSSGLCVLVMLYYLLFSFADNICCIS 921
             G F   S    ++  P+ +S +C+    YYLL  F +N  CIS
Sbjct: 80164 GIFFLPSACLTALGLPNATSFVCIQSFRYYLLKLF*NNFKCIS 80292


>GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-7839148
             from base 500001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.3
 Identities = 11/34 (32%), Positives = 16/34 (46%)
 Frame = +1 / +2

                                               
Query: 814   PLFGSMPPPSVSSGLCVLVMLYYLLFSFADNICC 915
             P++   PPP   SG C     ++L      N+CC
Sbjct: 21350 PVYVQQPPPRRESGGCCRTCCHFLCCLCLINLCC 21451


>GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-14627172
            from base 600001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1 / +1

                                     
Query: 856  LCVLVMLYYLLFSFADNICCISCCS 930
            LC+ +   Y LFSF    CC S CS
Sbjct: 9202 LCINI*FTYYLFSFC*LSCCSSSCS 9276


>GI-14627172_6 gi-14627172_6.seq Continuation (6 of 8) of gi-14627172 from
              base 500001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1 / +2

                                       
Query: 856    LCVLVMLYYLLFSFADNICCISCCS 930
              LC+ +   Y LFSF    CC S CS
Sbjct: 109202 LCINI*FTYYLFSFC*LSCCSSSCS 109276


 Score = 29.5 bits (58), Expect = 1.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1 / -3

                                                        
Query: 805   AFSPLFGSMPPPSVSSGLCVLVMLYYLLFSFADNICCISCCS* 933
             AF  +  S     +S  L  L++  +  F F ++ CC  CCS*
Sbjct: 85926 AFEAVILSRLSSFLSLLLSSLILFNFNCFIFKESCCCCCCCS* 85798


>GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-7839148
             from base 200001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3 / +2

                                 
Query: 661   IRVQMHRSFWSNIYRHLXXL 602
             + V+ HR FWS+++R+L  +
Sbjct: 11849 LAVKFHRPFWSSVFRYLADI 11908


 Score = 27.6 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2 / +3

                                            
Query: 671   APFLSLILFS*ITXCSFRFFWLGFVLSRYTS 763
             +PF+  I  +*+        W+  VLS YTS
Sbjct: 45198 SPFI*FIFVN*VINIEIEIIWIFVVLSNYTS 45290


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
              chromosome VI, complete ch
          Length = 270148

 Score = 27.6 bits (54), Expect(2) = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = +1 / +3

                                          
Query: 859    CVLVMLYYLLFSFADNICCISCCS*VRF 942
              C+   LYY++FSF     CI C S + F
Sbjct: 180339 CICGYLYYVVFSFQIMRDCIPCGSFLGF 180422


 Score = 18.9 bits (35), Expect(2) = 2.1
 Identities = 6/14 (42%), Positives = 9/14 (63%)
 Frame = +2 / +2

                            
Query: 695    FS*ITXCSFRFFWL 736
              FS*+  C  +F W+
Sbjct: 180182 FS*LGYCQPQFLWI 180223


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686
             from base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1 / +2

                                
Query: 874   LYYLLFSFADNICCISCCS 930
             +++ +F+F   ICC+ CCS
Sbjct: 34412 VFHGIFNFFLKICCLICCS 34468


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
              chromosome III, complete c
          Length = 316613

 Score = 28.1 bits (55), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3 / -3

                                      
Query: 756    TLPLLHLFFLTSGFFSRILSTFWF 827
              TLP++   +L  GFF+  ++  WF
Sbjct: 193482 TLPIIRTLYLLLGFFNLPMAAAWF 193411


>GI-6862570_4 gi-6862570_4.seq Continuation (4 of 6) of gi-6862570 from
             base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2 / -2

                                                    
Query: 242   SSAWNVVKGKPSKPAGNGMDKCIFSTAIAGSAPLLSSPG 126
             + A +V+ GK  +P  +  D+  FST IA     LSS G
Sbjct: 43165 NDARDVLDGKTCEPLPSSFDRFSFSTFIACLFKFLSSIG 43049


>GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-6322016 from
             base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = +2 / -1

                                     
Query: 773   PFFPNVWVFFSHSLHFLVLCPRRL 844
             P  P+ W+F      FL+ CP RL
Sbjct: 59699 PCLPHRWLFLQKGC*FLLNCPMRL 59628


>GI-14277709_1 gi-14277709_1.seq Continuation (1 of 7) of gi-14277709
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.3
 Identities = 13/57 (22%), Positives = 26/57 (44%)
 Frame = -3 / -1

                                                                      
Query: 943   RNELRNNKKCNKYYQQMKREDNRA*QERTNRTKQTAGA*NQKVERMREKNPDVRKKR 773
             +NE   NKK     ++   E+ +  QE  N+  +      Q+ E  ++   + +KK+
Sbjct: 64118 KNEDEENKKNEDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQ 63948


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
              chromosome I, complete chro
          Length = 230203

 Score = 27.6 bits (54), Expect = 6.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3 / -1

                                  
Query: 777    FFLTSGFFSRILSTFWFYAP 836
              F L +GF + ++  FW+++P
Sbjct: 106423 FVLYAGFMALVIGCFWYFSP 106364


>GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-6323989 from
             base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (55%)
 Frame = -1 / +3

                                             
Query: 270   RPQLDGEGLQLRLERGEGETLQAGGQRHGQVH 175
             RP+    G  +   RG+G+  QAG  + G+V+
Sbjct: 40953 RPKCHAPGRDMAQGRGQGQRGQAGTSKGGEVN 41048


>GI-6322016_1 gi-6322016_1.seq Continuation (1 of 5) of gi-6322016 from
             base 1
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2 / +2

                                 
Query: 785   NVWVFFSHSLHFLVLCPRRL 844
             N+ V FS+   FL+LCP +L
Sbjct: 32324 NLQVHFSYQFLFLILCPCKL 32383


 Score = 27.2 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2 / -2

                                                      
Query: 677   FLSLILFS*ITXCSFRFFWLGFVLSRYTSLATPFFPNVWVF 799
             F++ I  S +T CSF F  L +++  +  L       VW F
Sbjct: 85036 FVTRIAKSSMTRCSFFFASLNYIVDNFCVLFLIIIMTVWRF 84914


>GI-14389432_03 gi-14389432_03.seq Continuation (3 of 11) of gi-14389432
             from base 200001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1 / -1

                                         
Query: 136   ERRGADPAMAVEKMHLSMPLPAGLEGFP 219
             +R G+DP  A+E+++  + +PA     P
Sbjct: 73304 DRMGSDPFRAIEQLNSKLKIPAAAVQIP 73221


>GI-14318434_10 gi-14318434_10.seq Continuation (10 of 11) of
             gi-14318434 from base 900001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +2 / +3

                                                        
Query: 695   FS*ITXCSFRFFWLGFVLSRYTSLATPFFPNVWVFFSHSLHFL 823
             FS  +   F F +L F      SL++P   + W+  S SL FL
Sbjct: 83016 FSFFSSDVFVFTFLTFSSVPSVSLSSPSTCSFWIETSESLRFL 83144


>GI-14318434_08 gi-14318434_08.seq Continuation (8 of 11) of gi-14318434
             from base 700001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +3 / -1

                                             
Query: 765   LLHLFFLTSGFFSRILSTFWFYAPAVCFVRFV 860
             +LHL F  +  FSR ++T  FY     F  F+
Sbjct: 96590 ILHLQFFEAFVFSRFMTTTRFYTLLSMFYHFM 96495


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15677466
Number of Sequences: 122
Number of extensions: 180939
Number of successful extensions: 15208
Number of sequences better than 10.0: 18
length of query: 315
length of database: 4,402,102
effective HSP length: 44
effective length of query: 270
effective length of database: 4,396,734
effective search space: 1187118180
effective search space used: 1187118180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)