TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_E08_I15ZS5.seq
         (992 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6323989_8 gi-6323989_8.seq Continuation (8 of 8) of gi-632398...    36  0.022
GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-632398...    31  0.53
GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-1...    31  0.72
GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-632...    30  1.00
GI-6323501_10 gi-6323501_10.seq Continuation (10 of 10) of gi-63...    30  1.00
GI-14627172_4 gi-14627172_4.seq Continuation (4 of 8) of gi-1462...    29  2.6
GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-78...    29  3.5
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    29  3.5
GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of gi-783...    28  4.9
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    28  4.9
GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-1427...    28  6.7
GI-14270686_8 gi-14270686_8.seq Continuation (8 of 9) of gi-1427...    28  6.7
GI-14627172_8 gi-14627172_8.seq Continuation (8 of 8) of gi-1462...    28  6.7
GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-632398...    27  9.2
GI-14318434_05 gi-14318434_05.seq Continuation (5 of 11) of gi-1...    27  9.2

>GI-6323989_8 gi-6323989_8.seq Continuation (8 of 8) of gi-6323989 from
             base 700001
          Length = 84328

 Score = 35.9 bits (72), Expect = 0.022
 Identities = 12/28 (42%), Positives = 13/28 (45%)
 Frame = -2 / -3

                                         
Query: 613   NPETPTHHRRCPPAHSNTAPSTPPSRHT 530
             +P TPTHH    P H    P   P  HT
Sbjct: 84146 HPHTPTHHTHTTPTHHTHTPHPHPHTHT 84063


 Score = 35.4 bits (71), Expect = 0.030
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2 / -2

                                      
Query: 613   NPETPTHHRRCPPAHSNTAPSTPPS 539
             +P TPTHH   P  H +T P+  P+
Sbjct: 84318 HPHTPTHHTHTPHPHPHTTPTPTPT 84244


 Score = 29.0 bits (57), Expect = 2.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2 / -3

                                 
Query: 604   TPTHHRRCPPAHSNTAPSTP 545
             TPTHH   P  H +T   TP
Sbjct: 84113 TPTHHTHTPHPHPHTHTHTP 84054


>GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-6323989 from
             base 100001
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.53
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2 / -2

                                        
Query: 610   PETPTHHRRCPPAHSNTAPSTPPSRHT 530
             P TPT H+ CPP    T P+    R T
Sbjct: 19702 PVTPTIHKGCPPRTPKTIPAIALDRST 19622


>GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-14318439
             from base 500001
          Length = 110000

 Score = 30.8 bits (61), Expect = 0.72
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3 / -1

                            
Query: 363   ENCDCPPRGNVCPPP 319
             +NC  PPRG +C PP
Sbjct: 13484 QNCRLPPRGRICFPP 13440


>GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-6323501
             from base 100001
          Length = 110000

 Score = 30.4 bits (60), Expect = 1.00
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +3 / -3

                                        
Query: 561   VLLWAGGQRLWCVGVSGFCVVFRFARL 641
             +LL+A    +WCV    FCV + FA L
Sbjct: 24714 ILLYAQ*GHIWCVNRCLFCVCYNFALL 24634


>GI-6323501_10 gi-6323501_10.seq Continuation (10 of 10) of gi-6323501
             from base 900001
          Length = 24430

 Score = 30.4 bits (60), Expect = 1.00
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = -2 / -2

                                     
Query: 604   TPTHHRRCPPAHSNTAPSTPPSRH 533
             TP  H    P H++T P T P+ H
Sbjct: 24420 TPHPHHTHTPHHTHTHPHTTPTHH 24349


 Score = 29.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2 / -1

                                        
Query: 613   NPETPTHHRRCPPAHSNTAPSTPPSRH 533
             +P TPTHH   P  H +   +  P  H
Sbjct: 24385 HPHTPTHHTHTPHPHPHHTHTHTPHPH 24305


>GI-14627172_4 gi-14627172_4.seq Continuation (4 of 8) of gi-14627172
             from base 300001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1 / +2

                              
Query: 992   ICFVVLCNRVIYNVRRS 942
             +C+++LC  + YN+RR+
Sbjct: 57776 LCYIILCKTLKYNIRRA 57826


>GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-7839148
             from base 1400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1 / +3

                           
Query: 673   PFIWKCFPCLYLSS 714
             PF+  C PCLY+SS
Sbjct: 15351 PFVTPCTPCLYVSS 15392


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
           chromosome III, complete c
          Length = 316613

 Score = 28.6 bits (56), Expect = 3.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2 / +3

                                    
Query: 604 TPTHHRRCPPAHSNTAPSTPPSRHT 530
           TPTHH      H +T P+     HT
Sbjct: 204 TPTHHTHTHTPHPHTTPTHTTPTHT 278


 Score = 28.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2 / +1

                                   
Query: 601 PTHHRRCPPAHSNTAPSTPPSRHT 530
           PTHH    P H      TP   HT
Sbjct: 1   PTHHTHTTPTHHTHHTHTPTPHHT 72


 Score = 27.2 bits (53), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (53%)
 Frame = -2 / +3

                                 
Query: 604 TPTHHRRCPPAHSNTAPSTPPS 539
           TPTHH      H++  P T P+
Sbjct: 93  TPTHHTHTHHTHTHPHPHTTPT 158


>GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of
           gi-7839148 from base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2 / +1

                                      
Query: 613 NPETPTHHRRCPPAHSNTAPSTPPSRH 533
           +P T TH     P H++T  +  P+ H
Sbjct: 52  HPHTHTHTPHTTPHHTHTHTTPTPTHH 132


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
            chromosome VI, complete ch
          Length = 270148

 Score = 28.1 bits (55), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = -2 / +1

                                    
Query: 604  TPTHHRRCPPAHSNTAPSTPPSRH 533
            TP  H    P H++T P+TP   H
Sbjct: 4738 TPHPHTTPTPHHTHTTPTTPTPTH 4809


>GI-14277709_7 gi-14277709_7.seq Continuation (7 of 7) of gi-14277709
             from base 600001
          Length = 66445

 Score = 27.6 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2 / -3

                                 
Query: 604   TPTHHRRCPPAHSNTAPSTP 545
             TPTHH   P  H +   +TP
Sbjct: 66335 TPTHHTHTPTPHPHHTHTTP 66276


>GI-14270686_8 gi-14270686_8.seq Continuation (8 of 9) of gi-14270686
             from base 700001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3 / -2

                           
Query: 345   PRGNVCPPPGNACC 304
             P G + P PGN CC
Sbjct: 21673 PGGRMLPSPGNGCC 21632


>GI-14627172_8 gi-14627172_8.seq Continuation (8 of 8) of gi-14627172
             from base 700001
          Length = 45444

 Score = 27.6 bits (54), Expect = 6.7
 Identities = 7/12 (58%), Positives = 9/12 (74%)
 Frame = +1 / +2

                         
Query: 133   DNHCGGTNYHHR 168
             +NHC G  YHH+
Sbjct: 26513 NNHCNGKTYHHK 26548


>GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-6323989 from
             base 600001
          Length = 110000

 Score = 27.2 bits (53), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2 / +1

                           
Query: 337   ECLSPPRKCLLWLM 296
             EC+S P  C+LWL+
Sbjct: 63058 ECMSTPLGCILWLV 63099


>GI-14318434_05 gi-14318434_05.seq Continuation (5 of 11) of gi-14318434
             from base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 9.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2 / +1

                                
Query: 638   SLPSSCSLPAGCLSSGSVF 694
             SLPSSCS P   LS+ S F
Sbjct: 50251 SLPSSCSPPVFSLSASSSF 50307


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14490727
Number of Sequences: 122
Number of extensions: 118107
Number of successful extensions: 10523
Number of sequences better than 10.0: 15
length of query: 330
length of database: 4,402,102
effective HSP length: 44
effective length of query: 286
effective length of database: 4,396,734
effective search space: 1257465924
effective search space used: 1257465924
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)