TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_E09_I17ZS5.seq
         (884 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-632201...    30  0.87
GI-14277709_5 gi-14277709_5.seq Continuation (5 of 7) of gi-1427...    25  3.9
GI-6323989_1 gi-6323989_1.seq Continuation (1 of 8) of gi-632398...    28  4.3
GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-1...    28  4.3
GI-7276232_6 gi-7276232_6.seq Continuation (6 of 6) of gi-727623...    28  4.3
GI-7839148_13 gi-7839148_13.seq Continuation (13 of 16) of gi-78...    28  5.8
GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-727623...    28  5.8
GI-14277709_6 gi-14277709_6.seq Continuation (6 of 7) of gi-1427...    28  5.8
GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-1...    27  8.0

>GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-6322016 from
             base 200001
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.87
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1 / +2

                               
Query: 550   NKIKLLPPFLVFLLSWDV 603
             NK+ LLPP + F LSW V
Sbjct: 28553 NKVTLLPPRVFFCLSWSV 28606


>GI-14277709_5 gi-14277709_5.seq Continuation (5 of 7) of gi-14277709
             from base 400001
          Length = 110000

 Score = 25.3 bits (49), Expect(2) = 3.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2 / -1

                            
Query: 503   LLFPMIACNLAACFV 547
             LLFP +AC +  CF+
Sbjct: 28484 LLFPSLACCIPFCFI 28440


 Score = 20.3 bits (38), Expect(2) = 3.9
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = +2 / -1

                          
Query: 581   CFFYHGMFFATYF 619
             CF Y   FF  Y 
Sbjct: 28448 CFIYLLFFFLIYL 28410


>GI-6323989_1 gi-6323989_1.seq Continuation (1 of 8) of gi-6323989
            from base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2 / +2

                                    
Query: 449  NHAFVSIPWHRPSAKDFLLLFPMI 520
            N   + +P+HRPSA  + ++ P I
Sbjct: 6875 NPTLLPLPYHRPSATHYTVVLPSI 6946


>GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-14318434
             from base 200001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1 / +2

                                                     
Query: 490   QGLPFAFPDDCMQLSCLFC*NKIKLLPPFLVFLLSWDVFC 609
             Q + F FP + M++    C* K++L      FLL + + C
Sbjct: 23765 QFVSFDFPSNEMRIQFCLC*QKVQLFSLSFGFLLLFFLLC 23884


>GI-7276232_6 gi-7276232_6.seq Continuation (6 of 6) of gi-7276232 from
             base 500001
          Length = 76869

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2 / +1

                               
Query: 473   WHRPSAKDFLLLFPMIAC 526
             +HRPS + FL +FP   C
Sbjct: 29962 YHRPSRR*FLYIFPKFCC 30015


>GI-7839148_13 gi-7839148_13.seq Continuation (13 of 16) of gi-7839148
             from base 1200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 16/39 (40%)
 Frame = +2 / +2

                                                    
Query: 437   PMNXNHAFVSIPWHRPSAKDFLLLFPMIACNLAACFVKT 553
             P    + FV I W   +  D+LL+       LA C   T
Sbjct: 37076 PATTENGFVLIGWVNSNQSDYLLICQSYIFKLAYCVAST 37192


>GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-7276232 from
             base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (42%)
 Frame = +3 / -1

                                                    
Query: 18    RCGTXXPTHQMERETPRRTGAGAAAKSMSTTAGYLARRA 134
             RC       Q +RE  R TGA A+A +     G  A  A
Sbjct: 74768 RCAVANTVKQFKRENVRCTGAAASAAADQRGCGAAAHDA 74652


 Score = 27.2 bits (53), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2 / +3

                           
Query: 581   CFFYHGMFFATYFF 622
             C FYH +FF+ +FF
Sbjct: 72543 CLFYHIIFFSFFFF 72584


>GI-14277709_6 gi-14277709_6.seq Continuation (6 of 7) of gi-14277709
             from base 500001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2 / +3

                           
Query: 581   CFFYHGMFFATYFF 622
             CFF+H + F T+FF
Sbjct: 14100 CFFHHDICFRTFFF 14141


>GI-14318439_06 gi-14318439_06.seq Continuation (6 of 11) of gi-14318439
             from base 500001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3 / +2

                                 
Query: 168   RALNDTLNWAVHRHLFYHDA 227
             RAL+D+ N+ +H H  +H A
Sbjct: 79484 RALSDSNNFTIHHHHHHHHA 79543


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15975621
Number of Sequences: 122
Number of extensions: 187692
Number of successful extensions: 11969
Number of sequences better than 10.0: 9
length of query: 294
length of database: 4,402,102
effective HSP length: 44
effective length of query: 250
effective length of database: 4,396,734
effective search space: 1099183500
effective search space used: 1099183500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)