TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_F10_K19ZS5.seq
         (986 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-1462...    25  0.83
GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-632201...    30  0.99
GI-6322016_1 gi-6322016_1.seq Continuation (1 of 5) of gi-632201...    30  0.99
GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-727623...    30  1.4
GI-14318434_11 gi-14318434_11.seq Continuation (11 of 11) of gi-...    29  2.6
GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-632398...    29  2.6
GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-632201...    28  6.6
GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-1...    28  6.6
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  6.6
GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-632...    27  9.1

>GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-14627172
             from base 400001
          Length = 110000

 Score = 24.9 bits (48), Expect(2) = 0.83
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2 / +2

                                
Query: 182   LCCLLVESVFYLMKMAVSL 238
             LCCL++ ++F+L K   +L
Sbjct: 60482 LCCLIMFTLFFLQKSRYTL 60538


 Score = 23.5 bits (45), Expect(2) = 0.83
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1 / +3

                                  
Query: 349   YTTLMESLTHEQVTHKFKTLV 411
             YTT+ E+  HE   H++   V
Sbjct: 60615 YTTIKETRVHEHNLHRYSISV 60677


>GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-6322016
            from base 100001
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.99
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2 / +1

                                     
Query: 233  SLNV*RHMMVVLPPKFIESQWLAST 307
            ++ V R + ++LPPK I  Q++ ST
Sbjct: 3466 NIPVGREIKIILPPKAIALQFVKST 3540


>GI-6322016_1 gi-6322016_1.seq Continuation (1 of 5) of gi-6322016 from
              base 1
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.99
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2 / +2

                                       
Query: 233    SLNV*RHMMVVLPPKFIESQWLAST 307
              ++ V R + ++LPPK I  Q++ ST
Sbjct: 103466 NIPVGREIKIILPPKAIALQFVKST 103540


>GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-7276232 from
             base 400001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3 / +2

                                 
Query: 495   RILSSVILPSSFFDYFWDPF 554
             R+ S +I+P  FF Y W PF
Sbjct: 12596 RVWSRMIIPHQFFFYLWCPF 12655


>GI-14318434_11 gi-14318434_11.seq Continuation (11 of 11) of
             gi-14318434 from base 1000001
          Length = 90937

 Score = 29.0 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = +1 / +3

                                         
Query: 325   DVEFKRAGYTTLMESLTHEQVTHKFKTL 408
             DVEFK+  Y  L  SL+ ++  HK   L
Sbjct: 47589 DVEFKKKIYLVLKSSLSGDEAAHKLLKL 47672


>GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-6323989 from
             base 100001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3 / -2

                                               
Query: 876   SYPSPRMP*X*WFHISPLDARLSSFSNCHLLSNA 977
             +YP  R P  *W  I P+   L++  N H +SN+
Sbjct: 39247 NYPEYRNPGR*WNFICPVFNNLANDRNLHSISNS 39146


>GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-6322016 from
             base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 17/22 (76%)
 Frame = +3 / -3

                                   
Query: 480   FGLLSRILSSVILPSSFFDYFW 545
             +G+ SRILS+++L  +FF + +
Sbjct: 47328 WGISSRILSTILLAGAFFSFIF 47263


>GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-14389432
             from base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3 / +2

                               
Query: 513   ILPSSFFDYFWDPFLAGF 566
             +L   FFDYF + FL GF
Sbjct: 82589 VL*PHFFDYFRESFLDGF 82642


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
              chromosome III, complete c
          Length = 316613

 Score = 27.6 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2 / +2

                                        
Query: 481    KANNHPSTKKAGFCLDKGIPPPHGQG 404
              + N+H  T+   FC D+ I  PH +G
Sbjct: 158708 RLNDHQLTQATSFCWDQDII*PHTKG 158785


>GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-6323501
             from base 700001
          Length = 110000

 Score = 27.2 bits (53), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = +2 / -3

                                                   
Query: 338   REQVTRH*WSRSPMNR*RTNSKPLSVWGGDTLVKAKTC 451
             R+Q    *W     N  ++++ PL+++GGD   +  TC
Sbjct: 79149 RKQNNNK*WLIKLFNYRKSSNLPLNLYGGDIQGQLYTC 79036


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 18466587
Number of Sequences: 122
Number of extensions: 232055
Number of successful extensions: 13264
Number of sequences better than 10.0: 10
length of query: 328
length of database: 4,402,102
effective HSP length: 44
effective length of query: 284
effective length of database: 4,396,734
effective search space: 1248672456
effective search space used: 1248672456
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)