TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_F11_K21ZS5.seq
         (961 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of gi-...    29  1.8
GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-1...    29  3.4
GI-7839148_05 gi-7839148_05.seq Continuation (5 of 16) of gi-783...    28  4.7
GI-6324971_03 gi-6324971_03.seq Continuation (3 of 10) of gi-632...    28  6.4
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    28  6.4
GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-1...    27  8.8

>GI-14318439_10 gi-14318439_10.seq Continuation (10 of 11) of
             gi-14318439 from base 900001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -3 / -1

                            
Query: 299   HPAPGAPCTPASPPG 255
             HPAPG P T +S PG
Sbjct: 32450 HPAPGRPSTTSSSPG 32406


>GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-14318434
             from base 200001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 14/24 (57%)
 Frame = -3 / +1

                                     
Query: 365   KSGSNHRKRWRNNPRGIE*GSTHP 294
             K   NH K+W NN + I *  +HP
Sbjct: 44518 KCEMNHDKKWENNTKVIV*YRSHP 44589


>GI-7839148_05 gi-7839148_05.seq Continuation (5 of 16) of gi-7839148
             from base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3 / +2

                               
Query: 299   HPAPGAPCTPASPPGKKK 246
             HP PG P +P +PP +K+
Sbjct: 11432 HPHPGHPKSPPTPPIRKR 11485


>GI-6324971_03 gi-6324971_03.seq Continuation (3 of 10) of gi-6324971
             from base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2 / -3

                                  
Query: 327   SPRYRIGIHSSRTRCSLHSSI 265
             S RY+  + SS +RCS HS I
Sbjct: 71172 SSRYKNSVFSSASRCSCHSWI 71110


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
             chromosome VI, complete ch
          Length = 270148

 Score = 27.6 bits (54), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (61%)
 Frame = +3 / -2

                             
Query: 246   LFFTRXRCWSAGSTWC 293
             LF++  +CW   S WC
Sbjct: 99036 LFYSCSKCWDLTSNWC 98989


>GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-14318439
             from base 1
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 13/29 (43%)
 Frame = +3 / +1

                                          
Query: 240   KNLFFTRXRCWSAGSTWCGMSGSLFDTAG 326
             +N+     R WS G   CG S  LF   G
Sbjct: 30292 RNITTVIERAWSEGVGRCGRSSRLFSVKG 30378


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6491434
Number of Sequences: 122
Number of extensions: 49785
Number of successful extensions: 3997
Number of sequences better than 10.0: 6
length of query: 320
length of database: 4,402,102
effective HSP length: 44
effective length of query: 275
effective length of database: 4,396,734
effective search space: 1209101850
effective search space used: 1209101850
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)