TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_G01_M01ZS5.seq
         (797 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae ...    33  0.11
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    29  2.0
GI-7839148_09 gi-7839148_09.seq Continuation (9 of 16) of gi-783...    29  2.7
GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-1...    29  2.7
GI-14270686_1 gi-14270686_1.seq Continuation (1 of 9) of gi-1427...    29  2.7
GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-783...    28  3.8
GI-7276232_4 gi-7276232_4.seq Continuation (4 of 6) of gi-727623...    28  3.8
GI-6324971_02 gi-6324971_02.seq Continuation (2 of 10) of gi-632...    28  3.8
GI-6324971_01 gi-6324971_01.seq Continuation (1 of 10) of gi-632...    28  3.8
GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-1427...    28  3.8
GI-7839148_07 gi-7839148_07.seq Continuation (7 of 16) of gi-783...    28  5.2
GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-686257...    28  5.2
GI-6862570_2 gi-6862570_2.seq Continuation (2 of 6) of gi-686257...    28  5.2
GI-6862570_4 gi-6862570_4.seq Continuation (4 of 6) of gi-686257...    27  7.1
GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-632...    27  7.1
GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-632...    27  7.1
GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae ...    27  9.8
GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-727623...    27  9.8
GI-6324971_06 gi-6324971_06.seq Continuation (6 of 10) of gi-632...    27  9.8
GI-14627172_4 gi-14627172_4.seq Continuation (4 of 8) of gi-1462...    27  9.8
GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-1462...    27  9.8
GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-1...    27  9.8

>GI-6226515 gi|6226515|ref|NC_001224.1| Saccharomyces cerevisiae
             mitochondrion, complete gen
          Length = 85779

 Score = 33.1 bits (66), Expect = 0.11
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -1 / -3

                                          
Query: 527   GGPPPNFSRGRYFFAGAPPPQKKRWGVFF 441
             G PP +   G   F G PPP++ R G+++
Sbjct: 83392 GSPPVSIRGGPSLFRGPPPPRRGRTGLYY 83306


 Score = 28.6 bits (56), Expect = 2.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3 / +3

                                 
Query: 468   GGGGPRKKISAARKIGGGTP 527
             GGGGPRK     R + GG P
Sbjct: 83334 GGGGPRKSEGPPRILTGGEP 83393


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686
             from base 400001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3 / -2

                                   
Query: 342   GYLPSHPEN*RTPPFQGIFEKI 407
             G +P H  N + PP Q +FEKI
Sbjct: 21208 GIVPKHVVNVQNPPKQEVFEKI 21143


>GI-7839148_09 gi-7839148_09.seq Continuation (9 of 16) of gi-7839148
             from base 800001
          Length = 110000

 Score = 28.6 bits (56), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3 / -3

                               
Query: 219   EWPCATRYCPTVXPCFPA 166
             +WPC T Y PT   C+ A
Sbjct: 67020 QWPCRTGYRPTNFRCYSA 66967


>GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-14389432
             from base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (53%)
 Frame = +1 / -2

                                                  
Query: 208   TWPFTMPSLYRVVHGIDVFDPQFNIVSPGAGMSNLLS 318
             T P T  +L RVV  + V  P     SPG G ++L++
Sbjct: 58576 TAPTTASNLVRVVRAMQVHKPILLEGSPGVGKTSLIT 58466


>GI-14270686_1 gi-14270686_1.seq Continuation (1 of 9) of gi-14270686
             from base 1
          Length = 110000

 Score = 28.6 bits (56), Expect = 2.7
 Identities = 10/36 (27%), Positives = 18/36 (49%)
 Frame = -1 / +3

                                                 
Query: 512   NFSRGRYFFAGAPPPQKKRWGVFFLSPKAKIFGVQD 405
             +  +G+Y F   PP    + G+ F  P+   F V++
Sbjct: 66399 SLGKGKYCFKLVPPQPGSKKGLTFTEPRVHYFAVEN 66506


>GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-7839148
             from base 200001
          Length = 110000

 Score = 28.1 bits (55), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1 / +3

                            
Query: 482   GAPPPQKKRWGVFFL 438
             G PP  +KRW  FFL
Sbjct: 65487 GQPPASRKRWKTFFL 65531


>GI-7276232_4 gi-7276232_4.seq Continuation (4 of 6) of gi-7276232 from
             base 300001
          Length = 110000

 Score = 28.1 bits (55), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1 / -3

                                              
Query: 503   RGRYFFAGAPPPQKKRWGVFFLSPKAKIFGVQD 405
             +GRY F   PP    + G+ F  P+   F V +
Sbjct: 91194 KGRYCFKLLPPQPGSKKGLTFTQPRTHYFAVDN 91096


>GI-6324971_02 gi-6324971_02.seq Continuation (2 of 10) of gi-6324971
            from base 100001
          Length = 110000

 Score = 28.1 bits (55), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (55%)
 Frame = +3 / -2

                                   
Query: 204  SHMAIHNAQPLSCCPWY*CLRPP 272
            SH  + N  PLSCC   * L+ P
Sbjct: 6607 SHPIVPNTHPLSCCKLR*FLQAP 6539


>GI-6324971_01 gi-6324971_01.seq Continuation (1 of 10) of gi-6324971 from
              base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (55%)
 Frame = +3 / -1

                                     
Query: 204    SHMAIHNAQPLSCCPWY*CLRPP 272
              SH  + N  PLSCC   * L+ P
Sbjct: 106607 SHPIVPNTHPLSCCKLR*FLQAP 106539


>GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-14270686
             from base 500001
          Length = 110000

 Score = 28.1 bits (55), Expect = 3.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3 / +2

                       
Query: 276   QHRLPWCWHV 305
             +H LPWCW V
Sbjct: 81719 RHHLPWCWLV 81748


>GI-7839148_07 gi-7839148_07.seq Continuation (7 of 16) of gi-7839148
             from base 600001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3 / +2

                             
Query: 45    PTPTFWXKFEITTTSP 92
             PTPT W +F+ T  SP
Sbjct: 89528 PTPTLWKRFKNTLLSP 89575


>GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-6862570 from
             base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3 / +2

                                  
Query: 468   GGGGPRKKISAARKIGGGTPP 530
             GGGG  K +S+++  GGG  P
Sbjct: 36881 GGGGSAKSLSSSKPGGGGGSP 36943


 Score = 26.7 bits (52), Expect = 9.8
 Identities = 8/28 (28%), Positives = 14/28 (49%)
 Frame = -1 / -2

                                         
Query: 332   LFQGRESKLDMPAPGETMLNWGSKTSIP 249
             LF    S  +  AP  +++NW    ++P
Sbjct: 61492 LFSSNMS*YESLAPNNSLVNWSILGTLP 61409


>GI-6862570_2 gi-6862570_2.seq Continuation (2 of 6) of gi-6862570 from
             base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3 / -3

                             
Query: 141   MMKSA*FIAIRSAVNW 94
             ++KS+*FIA R A+NW
Sbjct: 93069 LLKSS*FIASRFAINW 93022


 Score = 26.7 bits (52), Expect = 9.8
 Identities = 10/16 (62%), Positives = 13/16 (80%)
 Frame = -3 / -3

                             
Query: 141   MMKSA*FIAIRSAVNW 94
             + KS+*FIA R A+NW
Sbjct: 94332 LFKSS*FIASRFAINW 94285


>GI-6862570_4 gi-6862570_4.seq Continuation (4 of 6) of gi-6862570 from
             base 300001
          Length = 110000

 Score = 27.2 bits (53), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1 / +2

                                 
Query: 271   QFNIVSPGAGMSNLLSLPWN 330
             QF ++ P AGM  ++ + W 
Sbjct: 76952 QFTVMEPSAGMFIIIKINWG 77011


>GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-6323501
             from base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3 / +2

                        
Query: 426   QNFWCSGFFQK 394
             +NFWC  FFQK
Sbjct: 40661 ENFWC*YFFQK 40693


>GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-6323501
             from base 200001
          Length = 110000

 Score = 27.2 bits (53), Expect = 7.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2 / +2

                         
Query: 340   FFGCSRVGKVNW 305
             FFG +RVGKV W
Sbjct: 19979 FFGLARVGKVGW 20014


>GI-6319247 gi|6319247|ref|NC_001133.1| Saccharomyces cerevisiae
             chromosome I, complete chro
          Length = 230203

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = +3 / +1

                                   
Query: 408   LNTKNFGFRGQKKNPPSFFLGG 473
             + T+      +++NPPSFFL G
Sbjct: 68359 VQTRRMATFARQENPPSFFLNG 68424


 Score = 26.7 bits (52), Expect = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3 / +2

                                  
Query: 231    PLSCCPWY*CLRPPVQHRLP 290
              P S CPW   LRP  ++R P
Sbjct: 114038 P*SPCPWPRSLRPQTRYRTP 114097


>GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-7276232 from
             base 100001
          Length = 110000

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 8/26 (30%), Positives = 16/26 (60%)
 Frame = -3 / -3

                                       
Query: 207   ATRYCPTVXPCFPAILLGKVLVMMKS 130
             ++RYCP    C P +  G+ L+ +++
Sbjct: 45273 SSRYCPYQISCKPRVKAGEALLPIRN 45196


>GI-6324971_06 gi-6324971_06.seq Continuation (6 of 10) of gi-6324971
             from base 500001
          Length = 110000

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2 / +2

                                                  
Query: 187   GVXLFSGNSSWKGTGDDEVSMIHCNQVSCELAGEVVV 77
             G+ LFS +  W+    +++ + HC +V     G+V+V
Sbjct: 26615 GIQLFSQSVKWQRIRLEKIDIEHCFRVRQLQPGQVMV 26725


>GI-14627172_4 gi-14627172_4.seq Continuation (4 of 8) of gi-14627172
             from base 300001
          Length = 110000

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3 / +3

                    
Query: 279   HRLPWCW 299
             H +PWCW
Sbjct: 14517 H*MPWCW 14537


>GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-14627172
             from base 100001
          Length = 110000

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = +3 / -3

                                            
Query: 381   PFQGIFEKILNTKNFGFRGQKKNPPSFFLGG 473
             P +  FEK ++T   G R  +++PP  FL G
Sbjct: 26016 PTRVSFEKKIHTPPSGDRDAERSPPKKFLRG 25924


>GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-14318439
             from base 1
          Length = 110000

 Score = 26.7 bits (52), Expect = 9.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3 / +3

                                  
Query: 492   ISAARKIGGGTPPQKRKKTGV 554
             IS +R I GG   QKRKKT +
Sbjct: 10647 ISTSRGIRGGMQCQKRKKTTI 10709


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 21220123
Number of Sequences: 122
Number of extensions: 268286
Number of successful extensions: 15691
Number of sequences better than 10.0: 22
length of query: 265
length of database: 4,402,102
effective HSP length: 44
effective length of query: 221
effective length of database: 4,396,734
effective search space: 971678214
effective search space used: 971678214
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)