TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_G02_M03ZS5.seq
         (909 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14277709_3 gi-14277709_3.seq Continuation (3 of 7) of gi-1427...    43  1e-04
GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-632...    32  0.35
GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-1427...    30  1.2
GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-1427...    30  1.2
GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-686257...    29  3.2
GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-632398...    29  3.2
GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-632201...    29  3.2
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    29  3.2
GI-14318434_04 gi-14318434_04.seq Continuation (4 of 11) of gi-1...    28  4.4
GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-727623...    28  6.0
GI-14627172_3 gi-14627172_3.seq Continuation (3 of 8) of gi-1462...    28  6.0
GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-1...    28  6.0
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  6.0
GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-783...    27  8.3
GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-783...    27  8.3
GI-6862570_1 gi-6862570_1.seq Continuation (1 of 6) of gi-686257...    27  8.3
GI-14318439_08 gi-14318439_08.seq Continuation (8 of 11) of gi-1...    27  8.3
GI-14318434_07 gi-14318434_07.seq Continuation (7 of 11) of gi-1...    27  8.3
GI-14270686_2 gi-14270686_2.seq Continuation (2 of 9) of gi-1427...    27  8.3
GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-1...    24  9.1

>GI-14277709_3 gi-14277709_3.seq Continuation (3 of 7) of gi-14277709
             from base 200001
          Length = 110000

 Score = 43.2 bits (88), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2 / +1

                                                       
Query: 65    YTGSLDCAMQTLKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 190
             Y G +DC ++T++  G    Y GF     RIAPH +M   F+
Sbjct: 17779 YKGPIDCLVKTVRIEGVTALYKGFAAQVFRIAPHTIMCLTFM 17904


>GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-6323501
             from base 800001
          Length = 110000

 Score = 31.8 bits (63), Expect = 0.35
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2 / -3

                                                 
Query: 542   INGPGFFNVGRGKTWGFPTLNRLEHFPFSLLGVLPK 649
             +NG G     RG+TWG   +N ++ F  +  G LP+
Sbjct: 54288 VNGCGIIAAHRGRTWG*K*VNFIDIFLHASRGTLPR 54181


>GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-14270686
            from base 600001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2 / +2

                                                  
Query: 53   GKYPYTGSLDCAMQTLKTGGPFKFYSGFPVYCVRIAPH 166
            GK  YTG +      +K  G F  YSG   + +R  P+
Sbjct: 8579 GKRKYTGLVQSFKVIIKEEGLFSMYSGLTPHLMRTVPN 8692


>GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-14270686 from
              base 500001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2 / +3

                                                    
Query: 53     GKYPYTGSLDCAMQTLKTGGPFKFYSGFPVYCVRIAPH 166
              GK  YTG +      +K  G F  YSG   + +R  P+
Sbjct: 108579 GKRKYTGLVQSFKVIIKEEGLFSMYSGLTPHLMRTVPN 108692


>GI-6862570_5 gi-6862570_5.seq Continuation (5 of 6) of gi-6862570 from
             base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2 / -2

                                      
Query: 317   PKTTTGVQSCWKVIKCVEQGLVLLS 243
             P  T+  Q C+++  C    L+L+S
Sbjct: 79912 PSPTSAYQDCFQLASCTSDELLLMS 79838


>GI-6323989_5 gi-6323989_5.seq Continuation (5 of 8) of gi-6323989 from
             base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2 / -2

                                               
Query: 311   FLVDRVLSNFYRSLHLLWYS*RCYNNHIITLFVV 412
             F++ R+  +F +     WY+   + NH I LF+V
Sbjct: 57925 FIICRID*DFIKDFEQPWYNCDIFFNHAIGLFIV 57824


>GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-6322016 from
             base 200001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -2 / +2

                             
Query: 104   SSRFAWRSPKTQCMGT 57
             +SRF W+S + QC GT
Sbjct: 81455 TSRFCWKSSRFQCSGT 81502


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686
             from base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2 / +2

                                                      
Query: 65    YTGSLDCAMQTLKTGGPFKFYSGFPVYCVRIAPHVMMTWLF 187
             Y+G +DC  +T K  G   F+ G     +R  P   + + F
Sbjct: 16106 YSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAF 16228


>GI-14318434_04 gi-14318434_04.seq Continuation (4 of 11) of gi-14318434
             from base 300001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = +3 / -3

                              
Query: 237   SWRQEYQSLFDTFNNFP 287
             SWRQ+Y  LF  F +FP
Sbjct: 68754 SWRQQYSCLFVFFVSFP 68704


>GI-7276232_1 gi-7276232_1.seq Continuation (1 of 6) of gi-7276232 from
             base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/26 (34%), Positives = 13/26 (49%)
 Frame = -3 / -3

                                       
Query: 859   QGTTSLPXHRXNFWXKKGXXPI*ALW 782
             Q   +LP HR ++W  +G  P    W
Sbjct: 82212 QNVLNLPLHRDSWWEPRGTRPSRESW 82135


>GI-14627172_3 gi-14627172_3.seq Continuation (3 of 8) of gi-14627172
             from base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2 / -3

                                    
Query: 383   CNNVKSTTANVSYGKNCLKLCLP 315
             CNN  S  ANV   KNCL    P
Sbjct: 10923 CNNNVSNDANVPVCKNCLTSTTP 10855


>GI-14318439_01 gi-14318439_01.seq Continuation (1 of 11) of gi-14318439
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (53%)
 Frame = +2 / +3

                                     
Query: 560   FNVGRGKTWGFPTLNRLEHFPFSL 631
             F V  G TW F ++ R  HF F L
Sbjct: 92820 FYVPNGNTWHFYSICRSYHFAFKL 92891


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
             chromosome III, complete c
          Length = 316613

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = -3 / -2

                                                 
Query: 793   *ALWXXKKGEINQKFXGNFYHKIYRFPXCAFPHSGC 686
             *+LW   K    + F G+F+ KI +     F H+ C
Sbjct: 48649 *SLWFFIK*RYIRNFLGSFFKKIIKR*TLKFKHNSC 48542


 Score = 27.6 bits (54), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +2 / -2

                                 
Query: 341    YRSLHLLWYS*RCYNNHII 397
              YRS + L Y *R YNNH +
Sbjct: 205276 YRSSYSLHYR*RYYNNHSV 205220


>GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-7839148
             from base 200001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +2 / +3

                             
Query: 284   SSSFALPWLFLVDRVL 331
             SSSF LPWL  + +VL
Sbjct: 65637 SSSFRLPWLLFLHKVL 65684


>GI-7839148_02 gi-7839148_02.seq Continuation (2 of 16) of gi-7839148
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 8/12 (66%), Positives = 12/12 (99%)
 Frame = -2 / -1

                         
Query: 107   RSSRFAWRSPKT 72
             ++S+F+WRSPKT
Sbjct: 79226 KTSKFSWRSPKT 79191


>GI-6862570_1 gi-6862570_1.seq Continuation (1 of 6) of gi-6862570 from
             base 1
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1 / +3

                                  
Query: 636   PRREKGKCSKRFKVGNPQVFP 574
             PR+ K K +  FK+  P VFP
Sbjct: 18594 PRKNKEKKASGFKIQRPPVFP 18656


>GI-14318439_08 gi-14318439_08.seq Continuation (8 of 11) of gi-14318439
             from base 700001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2 / +3

                                      
Query: 56    KYPYTGSLDCAMQTLKTGGPFKFYS 130
             K  Y G +DC  +T+K  G    Y 
Sbjct: 58776 KSSYLGPMDCLKKTIKNEGIMGLYK 58850


>GI-14318434_07 gi-14318434_07.seq Continuation (7 of 11) of gi-14318434
             from base 600001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (75%)
 Frame = -2 / +3

                                  
Query: 386   YCNNVKSTTANVSYGKNCLKL 324
             Y ++++  ++  SYGK+CLKL
Sbjct: 19599 YFHHLRPASSLTSYGKSCLKL 19661


>GI-14270686_2 gi-14270686_2.seq Continuation (2 of 9) of gi-14270686
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -1 / +1

                             
Query: 642   KTPRREKGKCSKRFKV 595
             K  RR+KGKC K F++
Sbjct: 62935 KIQRRKKGKCEKEFRL 62982


 Score = 27.2 bits (53), Expect = 8.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2 / -1

                                                      
Query: 65    YTGSLDCAMQTLKTGGPFKFYSGFPVYCVRIAPHVMMTWLF 187
             Y G LDC  +T    G   F+ G     +R  P   + + F
Sbjct: 63761 YAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAF 63639


>GI-14318434_03 gi-14318434_03.seq Continuation (3 of 11) of gi-14318434
             from base 200001
          Length = 110000

 Score = 23.5 bits (45), Expect(2) = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3 / -1

                                       
Query: 124   ELKWATGLQGLHGAVQRPSVWVLARA 47
             ELK  T  Q LHG V R +  +L+R+
Sbjct: 75149 ELKLKTYYQQLHGTVVRDNGNLLSRS 75072


 Score = 20.8 bits (39), Expect(2) = 9.1
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1 / -2

                         
Query: 273   MCRTRIGTLVSN 238
             +CRT   T+ S+
Sbjct: 75211 LCRTSKSTVTSH 75176


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 22670988
Number of Sequences: 122
Number of extensions: 275573
Number of successful extensions: 16852
Number of sequences better than 10.0: 20
length of query: 303
length of database: 4,402,102
effective HSP length: 44
effective length of query: 258
effective length of database: 4,396,734
effective search space: 1134357372
effective search space used: 1134357372
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)