TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_G04_M07ZS5.seq
         (909 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-632398...    30  1.2
GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-632201...    30  1.2
GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of gi-1...    29  3.2
GI-14318439_04 gi-14318439_04.seq Continuation (4 of 11) of gi-1...    29  3.2
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    29  3.2
GI-6324971_07 gi-6324971_07.seq Continuation (7 of 10) of gi-632...    28  4.4
GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-1...    28  4.4
GI-7839148_07 gi-7839148_07.seq Continuation (7 of 16) of gi-783...    28  6.0
GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-632...    28  6.0
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  6.0
GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-632...    27  8.3

>GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-6323989 from
             base 600001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3 / -2

                                  
Query: 42    HPQPVRRVDGPPRAERFRLPR 104
             HP P+      PRAERFR PR
Sbjct: 42145 HPGPICDTLNAPRAERFRPPR 42083


>GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-6322016 from
             base 300001
          Length = 110000

 Score = 29.9 bits (59), Expect = 1.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2 / -3

                                        
Query: 503   SSGCSSGTRSRALPCPTSPRSAAKPWT 583
             +SGCS  T +  +PC TSP   A   T
Sbjct: 90678 TSGCSPKTITTTVPCSTSPSETASEST 90598


>GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of
            gi-14318439 from base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1 / -3

                                     
Query: 85   NVSVSLAGLDISRGHHGEPDVLGQR 159
            NVS++L  L+++ G H   D LG+R
Sbjct: 4758 NVSITL*NLNVTSGRHFTSDKLGER 4684


>GI-14318439_04 gi-14318439_04.seq Continuation (4 of 11) of gi-14318439
              from base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1 / -2

                                       
Query: 85     NVSVSLAGLDISRGHHGEPDVLGQR 159
              NVS++L  L+++ G H   D LG+R
Sbjct: 104758 NVSITL*NLNVTSGRHFTSDKLGER 104684


 Score = 27.6 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (56%)
 Frame = +1 / +2

                                  
Query: 625   DFKRDGYAYVQVHVFNDDDPR 687
             DFKR GY   Q +  ND  PR
Sbjct: 69470 DFKRQGYIKKQFNTSNDSIPR 69532


 Score = 27.2 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2 / -3

                               
Query: 533   RALPCPTSPRSAAKPWTP 586
             +AL CP SPR+  + +TP
Sbjct: 12144 QALKCPKSPRALVQAYTP 12091


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686
             from base 400001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3 / +1

                                    
Query: 486   PSERLYQVAARVGQEAXPSPAQP 554
             PS +  Q   + GQ+  PSPAQP
Sbjct: 55558 PSGQQQQPTTQFGQQVLPSPAQP 55626


>GI-6324971_07 gi-6324971_07.seq Continuation (7 of 10) of gi-6324971
             from base 600001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.4
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -3 / +3

                                                                 
Query: 874   YIIFTTQKKKXXXARDTQRKSKQXXRQXLKTKERSXKKHVDQXXQVFYITKK 719
             ++ F++ +K        +R  K   R     +     KHVD   QV+Y+  K
Sbjct: 40080 FLGFSSTRKVGSTD*RRERHGKHGRRAKKVHRRLVRSKHVDSAIQVYYVASK 40235


>GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-14389432
             from base 1
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = -1 / -3

                                
Query: 480   LHRPLLLEPVPVNQIQVEP 424
             L   LL+EPVPVNQ+ + P
Sbjct: 42039 LRSVLLVEPVPVNQLLLPP 41983


>GI-7839148_07 gi-7839148_07.seq Continuation (7 of 16) of gi-7839148
             from base 600001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (51%)
 Frame = -3 / -3

                                  
Query: 586   WRPWLRGTPRGGWAGEGXASC 524
             W P+     RG WA EG  SC
Sbjct: 74574 WGPYRDVLARGFWAAEGGQSC 74512


>GI-6323501_05 gi-6323501_05.seq Continuation (5 of 10) of gi-6323501
             from base 400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2 / +1

                                
Query: 155   WPRTSGSPWWPREMSRPAR 99
             WPR S +P WP+    P R
Sbjct: 76390 WPRCSTTP*WPKHRPFPLR 76446


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
              chromosome III, complete c
          Length = 316613

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2 / -1

                                 
Query: 539    LPCPTSPRSAAKPWTPIKL 595
              LPCP  PR+   P +P++L
Sbjct: 174758 LPCPLFPRNVQFPHSPLRL 174702


>GI-6323501_08 gi-6323501_08.seq Continuation (8 of 10) of gi-6323501
             from base 700001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3 / +1

                        
Query: 190   LSGPWACTCCV 158
             L  PW+C CCV
Sbjct: 93544 LDAPWSCRCCV 93576


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 13581372
Number of Sequences: 122
Number of extensions: 104255
Number of successful extensions: 8422
Number of sequences better than 10.0: 11
length of query: 303
length of database: 4,402,102
effective HSP length: 44
effective length of query: 258
effective length of database: 4,396,734
effective search space: 1134357372
effective search space used: 1134357372
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)