TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_G12_M23ZS5.seq
         (911 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-7276232_3 gi-7276232_3.seq Continuation (3 of 6) of gi-727623...    62  8e-14
GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    36  0.003
GI-14389432_07 gi-14389432_07.seq Continuation (7 of 11) of gi-1...    31  0.66
GI-14318439_03 gi-14318439_03.seq Continuation (3 of 11) of gi-1...    30  0.90
GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-632...    29  1.7
GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-632...    29  1.7
GI-14389432_11 gi-14389432_11.seq Continuation (11 of 11) of gi-...    29  2.3
GI-7839148_14 gi-7839148_14.seq Continuation (14 of 16) of gi-78...    29  2.3
GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-1...    29  2.3
GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-632398...    29  3.2
GI-6323989_6 gi-6323989_6.seq Continuation (6 of 8) of gi-632398...    29  3.2
GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-783...    28  4.4
GI-6324971_01 gi-6324971_01.seq Continuation (1 of 10) of gi-632...    28  6.1
GI-14270686_8 gi-14270686_8.seq Continuation (8 of 9) of gi-1427...    28  6.1
GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-1427...    28  6.1
GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of gi-783...    27  8.3
GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-727623...    27  8.3
GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-1462...    27  8.3
GI-14318434_09 gi-14318434_09.seq Continuation (9 of 11) of gi-1...    27  8.3

>GI-7276232_3 gi-7276232_3.seq Continuation (3 of 6) of gi-7276232 from
             base 200001
          Length = 110000

 Score = 62.5 bits (130), Expect = 2e-10
 Identities = 28/63 (44%), Positives = 37/63 (58%)
 Frame = -1 / +3

                                                                         
Query: 494   AVRRVDFPQPFKPSKPYRLR*LSSNSESTIRSCP*NVNERDSMWISRESGCEARTPVHVR 315
             A + VD PQPF P +PY   * +S  ES I++ P N  E +   ISRE   E +TPV  R
Sbjct: 24822 AFKNVDLPQPFSPRRPYLRP*FNSKPESWIKTLPWNSKETEDSLISREVSNELKTPVTTR 25001

                
Query: 314   SDK 306
             S++
Sbjct: 25002 SER 25010


 Score = 49.2 bits (101), Expect(2) = 8e-14
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +1 / -2

                                                  
Query: 307   LSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDS 417
             LSDR  TGVL+S   SRDI + S+SL FHG  LI DS
Sbjct: 25009 LSDRVVTGVLSSLETSRDIKLSSVSLLFHGKVLIQDS 24899


 Score = 44.6 bits (91), Expect(2) = 8e-14
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +1 / -2

                                       
Query: 469   CGKSTLLTAIGCRELPIPEHMDIHHL 546
             CGKST L A+  RE PIPEH+DI+ L
Sbjct: 24847 CGKSTFLKALATREYPIPEHIDIYLL 24770


>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
              chromosome VI, complete ch
          Length = 270148

 Score = 35.9 bits (72), Expect(2) = 0.003
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1 / +1

                                       
Query: 472    GKSTLLTAIGCRELPIPEHMDIHHL 546
              GKSTLL A+  REL +P+H+ I H+
Sbjct: 163189 GKSTLLRALSRRELNVPKHVSILHV 163263


 Score = 28.1 bits (55), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1 / -3

                              
Query: 494    AVRRVDFPQPFKPSKP 447
              A+ +VD P PF P++P
Sbjct: 163211 ALNKVDLPIPFWPTRP 163164


 Score = 21.2 bits (40), Expect(2) = 0.003
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3 / +3

                           
Query: 444    VWFARLKWLWEIY 482
              +W    KW W IY
Sbjct: 163161 IWSCGPKWYW*IY 163199


>GI-14389432_07 gi-14389432_07.seq Continuation (7 of 11) of gi-14389432
             from base 600001
          Length = 110000

 Score = 30.8 bits (61), Expect = 0.66
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1 / -2

                                 
Query: 497   IAVRRVDFPQPFKPSKPYRL 438
             IA+ +VD PQPF P  PY L
Sbjct: 38206 IALIKVDLPQPFGPQIPYLL 38147


>GI-14318439_03 gi-14318439_03.seq Continuation (3 of 11) of gi-14318439
             from base 200001
          Length = 110000

 Score = 30.4 bits (60), Expect = 0.90
 Identities = 8/23 (34%), Positives = 12/23 (51%)
 Frame = +2 / +1

                                    
Query: 593   ICCDEKTVKLEKGTETWAAQDNG 661
             +CCD   +  + G+ TW    NG
Sbjct: 25924 VCCDSFDISFDTGSTTWICSSNG 25992


>GI-6323501_03 gi-6323501_03.seq Continuation (3 of 10) of gi-6323501
             from base 200001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3 / -2

                                              
Query: 564   ASISRSKMMYVHVFRNGEFPAAYCGEKGRFPTT 466
             ++++ S +  V VF+NGE P       GR+P T
Sbjct: 78961 SALTWSSLRDVDVFKNGEMPLPITVADGRYPGT 78863


>GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-6323501
             from base 100001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3 / -2

                       
Query: 801   NCSWWFGERW 772
             +C WWF ERW
Sbjct: 25492 SCHWWFKERW 25463


>GI-14389432_11 gi-14389432_11.seq Continuation (11 of 11) of
             gi-14389432 from base 1000001
          Length = 78173

 Score = 29.0 bits (57), Expect = 2.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3 / +3

                                                          
Query: 657   LSCAAQVSVPFSNFTVFSSQQITACRPNMSEASISRSKMMYVHVF 523
             LSC ++ S+ F+NF + SS        N+  +S+  S   Y+ V+
Sbjct: 57711 LSCISRSSIIFTNFAISSSLYCILAEGNVLLSSVMISISGYLSVY 57845


>GI-7839148_14 gi-7839148_14.seq Continuation (14 of 16) of gi-7839148
             from base 1300001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.3
 Identities = 11/16 (68%), Positives = 12/16 (74%)
 Frame = -2 / -1

                             
Query: 640   SFSSLFQLHCFFITTD 593
             SFSSLF  H FF+ TD
Sbjct: 90707 SFSSLFLAHLFFLATD 90660


>GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-14318439
             from base 600001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.3
 Identities = 10/13 (76%), Positives = 12/13 (91%)
 Frame = +1 / -3

                          
Query: 724   RKTRRSKYSLGFG 762
             R+TRR KYSLG+G
Sbjct: 70980 RRTRRKKYSLGYG 70942


>GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-6323989
            from base 600001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1 / -2

                            
Query: 485  RVDFPQPFKPSKPYRL 438
            RVDFP P  P +PY L
Sbjct: 7729 RVDFPAPLGPHRPYLL 7682


>GI-6323989_6 gi-6323989_6.seq Continuation (6 of 8) of gi-6323989 from
              base 500001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1 / -1

                              
Query: 485    RVDFPQPFKPSKPYRL 438
              RVDFP P  P +PY L
Sbjct: 107729 RVDFPAPLGPHRPYLL 107682


>GI-7839148_03 gi-7839148_03.seq Continuation (3 of 16) of gi-7839148
             from base 200001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3 / +2

                           
Query: 459   LKWLWEIYPSHRNR 500
             LKW W  YP H  R
Sbjct: 38582 LKWRWRFYPPHEGR 38623


>GI-6324971_01 gi-6324971_01.seq Continuation (1 of 10) of gi-6324971
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2 / +3

                                                    
Query: 566   SDMFGLQAVICCDEKTVKLEKGTETWAAQDNGWRLTSWT 682
             S + G  A++C D  TV       T A QD+G+ +TS T
Sbjct: 75267 SFLLGKGAIVCHDSMTVAGIIDFATVADQDSGYGVTSVT 75383


>GI-14270686_8 gi-14270686_8.seq Continuation (8 of 9) of gi-14270686
            from base 700001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -1 / -2

                            
Query: 638  FQFPFPTSLFFHHNRL 591
            + FPFPT LFF  NR+
Sbjct: 5038 YGFPFPTMLFFLPNRV 4991


>GI-14270686_7 gi-14270686_7.seq Continuation (7 of 9) of gi-14270686 from
              base 600001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -1 / -1

                              
Query: 638    FQFPFPTSLFFHHNRL 591
              + FPFPT LFF  NR+
Sbjct: 105038 YGFPFPTMLFFLPNRV 104991


>GI-7839148_01 gi-7839148_01.seq Continuation (1 of 16) of gi-7839148
             from base 1
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3 / +1

                                    
Query: 75    IVGLRESPSPATNPQPSSYLTIP 143
             +VG +E P P T P P+ + T P
Sbjct: 95632 LVGSKEIPDPITVPAPTRHTTKP 95700


>GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-7276232 from
             base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1 / -1

                             
Query: 632   FPFPTSLFFHHNRLQL 585
             FPF TSLF HH  L +
Sbjct: 37502 FPFYTSLFIHHIMLSI 37455


>GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-14627172
             from base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = -3 / +3

                               
Query: 795   SWWFGERWXGKAKPKRIF 742
             SWW+ +RW   +  K IF
Sbjct: 53913 SWWYKKRWKQSSSQKCIF 53966


>GI-14318434_09 gi-14318434_09.seq Continuation (9 of 11) of gi-14318434
             from base 800001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = -3 / +3

                               
Query: 795   SWWFGERWXGKAKPKRIF 742
             SWW+ +RW   +  K IF
Sbjct: 83346 SWWYKKRWKQSSSQKCIF 83399


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 22422160
Number of Sequences: 122
Number of extensions: 285921
Number of successful extensions: 16690
Number of sequences better than 10.0: 19
length of query: 303
length of database: 4,402,102
effective HSP length: 44
effective length of query: 259
effective length of database: 4,396,734
effective search space: 1138754106
effective search space used: 1138754106
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)