TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_H03_O05ZS5.seq
         (896 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisia...    29  3.1
GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-632...    29  3.1
GI-14318434_08 gi-14318434_08.seq Continuation (8 of 11) of gi-1...    29  3.1
GI-14318434_07 gi-14318434_07.seq Continuation (7 of 11) of gi-1...    29  3.1
GI-6324971_02 gi-6324971_02.seq Continuation (2 of 10) of gi-632...    28  4.3
GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-1462...    28  4.3
GI-7839148_12 gi-7839148_12.seq Continuation (12 of 16) of gi-78...    27  8.2
GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-686257...    27  8.2

>GI-14318450 gi|14318450|ref|NC_001138.2| Saccharomyces cerevisiae
             chromosome VI, complete ch
          Length = 270148

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = +3 / +2

                                          
Query: 384   SGQEPSKIVPVSEGTTFGIVAGDSIATPS 470
             SG EP+    V EG    I AG   A+PS
Sbjct: 23597 SGHEPTHAGFVGEGALDAIAAGAIFASPS 23683


>GI-6323501_02 gi-6323501_02.seq Continuation (2 of 10) of gi-6323501
             from base 100001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +3 / +1

                                          
Query: 384   SGQEPSKIVPVSEGTTFGIVAGDSIATPS 470
             SG EP+    + +G   G V G+  A+PS
Sbjct: 33628 SGHEPTHAGFIGKGMLSGAVVGEIFASPS 33714


>GI-14318434_08 gi-14318434_08.seq Continuation (8 of 11) of
            gi-14318434 from base 700001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3 / +1

                              
Query: 663  RRRWIPRTPLVTPIYHHP 716
            R RW P+T    P+ HHP
Sbjct: 9682 RSRWNPKTATKPPLSHHP 9735


>GI-14318434_07 gi-14318434_07.seq Continuation (7 of 11) of gi-14318434
              from base 600001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3 / +2

                                
Query: 663    RRRWIPRTPLVTPIYHHP 716
              R RW P+T    P+ HHP
Sbjct: 109682 RSRWNPKTATKPPLSHHP 109735


>GI-6324971_02 gi-6324971_02.seq Continuation (2 of 10) of gi-6324971
             from base 100001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2 / -1

                               
Query: 737   CYLYMCTGYLGLLSFKTR 790
             C LY+CT +LG+ S  +R
Sbjct: 66203 CRLYICTNFLGIPSLSSR 66150


 Score = 27.2 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 18/39 (45%)
 Frame = +1 / -1

                                                    
Query: 160   GLAKCADCTRKNLKAEEAFKGLQVAIKCKNVHGDYESKR 276
             GL K    +RK  K+   F    V++K K    +YE  R
Sbjct: 72857 GLMKR*SLSRKTTKSNHVFTQP*VSLKLKRRT*NYERNR 72741


>GI-14627172_5 gi-14627172_5.seq Continuation (5 of 8) of gi-14627172
             from base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1 / -1

                            
Query: 238   KCKNVHGDYESKRWV 282
             +C N+ GD ES RW+
Sbjct: 90806 RCLNIQGDLESSRWM 90762


>GI-7839148_12 gi-7839148_12.seq Continuation (12 of 16) of gi-7839148
             from base 1100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -2 / -3

                                    
Query: 484   SGDAVDGVAMLSPATMPKVVPSE 416
             SG  V G+A+LSP  + +V P E
Sbjct: 64131 SGLGVGGIAVLSPMLISEVAPKE 64063


>GI-6862570_3 gi-6862570_3.seq Continuation (3 of 6) of gi-6862570 from
             base 200001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2 / -1

                                   
Query: 484   SGDAVDGVAMLSPATMPKVVPS 419
             SG  V G+ +LSP  + +V PS
Sbjct: 92099 SGLGVGGITVLSPMLISEVAPS 92034


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15795088
Number of Sequences: 122
Number of extensions: 141485
Number of successful extensions: 9419
Number of sequences better than 10.0: 8
length of query: 298
length of database: 4,402,102
effective HSP length: 44
effective length of query: 254
effective length of database: 4,396,734
effective search space: 1116770436
effective search space used: 1116770436
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)