TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/0941_H11_O21ZS5.seq
         (900 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-78...    34  0.070
GI-14627172_6 gi-14627172_6.seq Continuation (6 of 8) of gi-1462...    32  0.34
GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-632201...    31  0.47
GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-632201...    31  0.47
GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-1...    31  0.65
GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of gi-1...    29  1.7
GI-6324971_09 gi-6324971_09.seq Continuation (9 of 10) of gi-632...    29  2.3
GI-6323989_4 gi-6323989_4.seq Continuation (4 of 8) of gi-632398...    29  3.2
GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-632398...    29  3.2
GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-1427...    28  4.3
GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-1427...    28  4.3
GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-727623...    28  6.0
GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-1462...    28  6.0
GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-1...    28  6.0
GI-14270686_4 gi-14270686_4.seq Continuation (4 of 9) of gi-1427...    28  6.0
GI-14270686_3 gi-14270686_3.seq Continuation (3 of 9) of gi-1427...    28  6.0
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    28  6.0
GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-632...    25  6.9
GI-6324971_03 gi-6324971_03.seq Continuation (3 of 10) of gi-632...    27  8.2
GI-14277709_2 gi-14277709_2.seq Continuation (2 of 7) of gi-1427...    27  8.2

>GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-7839148
             from base 1400001
          Length = 110000

 Score = 34.1 bits (68), Expect = 0.070
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2 / +3

                                        
Query: 791   KKEKERAQQEKFPVHWTKDIYRHCFDN 711
             KK+K+  Q + F  HW   IYR CF+N
Sbjct: 12213 KKKKKARQ*KLFQCHWLLIIYRGCFNN 12293


>GI-14627172_6 gi-14627172_6.seq Continuation (6 of 8) of gi-14627172
             from base 500001
          Length = 110000

 Score = 31.8 bits (63), Expect = 0.34
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3 / -1

                                                
Query: 27    VTQIRSSCPMLESINLSYCTEITDVSLASLSKCAK 131
             +  I +  P L ++ L  C+ ITD SL  LSK  K
Sbjct: 92249 IESIVNLAPKLRNVFLGKCSRITDASLFQLSKLGK 92145


>GI-6322016_4 gi-6322016_4.seq Continuation (4 of 5) of gi-6322016
            from base 300001
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.47
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1 / +3

                                  
Query: 165  HWGNHGSPVCSALHILRATPTK 100
            HW  HG P C    ILRA  T+
Sbjct: 1779 HWNCHGEPACYNFMILRAEKTR 1844


>GI-6322016_3 gi-6322016_3.seq Continuation (3 of 5) of gi-6322016 from
              base 200001
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.47
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1 / +1

                                    
Query: 165    HWGNHGSPVCSALHILRATPTK 100
              HW  HG P C    ILRA  T+
Sbjct: 101779 HWNCHGEPACYNFMILRAEKTR 101844


>GI-14318439_07 gi-14318439_07.seq Continuation (7 of 11) of gi-14318439
             from base 600001
          Length = 110000

 Score = 30.8 bits (61), Expect = 0.65
 Identities = 15/53 (28%), Positives = 25/53 (46%)
 Frame = +3 / -2

                                                                  
Query: 393   ITPNGLMAALMVSGGLTRVKLHAAFTSMMPPHMLKVVEARGCAFQWIDKPFKV 551
             +TPN L+   M  GG  R+++ ++  S+     L    +  CA   +DK   V
Sbjct: 50932 VTPNVLIKDKMAPGGTPRLRIASSVNSLGSSQPLTNFSSTNCAIFLLDKTVPV 50774


>GI-14318439_05 gi-14318439_05.seq Continuation (5 of 11) of gi-14318439
             from base 400001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 21/42 (49%)
 Frame = +3 / +3

                                                       
Query: 435   GLTRVKLHAAFTSMMPPHMLKVVEARGCAFQWIDKPFKVEQE 560
             G T +K   ++ S MPP   K  +A G     +DK F ++ +
Sbjct: 93390 GFTHIKSQESYISKMPPKKGKQAQAAGKKKDNVDKTFGMKNK 93515


>GI-6324971_09 gi-6324971_09.seq Continuation (9 of 10) of gi-6324971
             from base 800001
          Length = 110000

 Score = 29.0 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1 / +2

                                    
Query: 703   EQTLSKQCRYISFVQWTGNFSCW 771
             E T    CR I+F+    N+SCW
Sbjct: 75656 ECTRKMDCRSITFLSRCANYSCW 75724


>GI-6323989_4 gi-6323989_4.seq Continuation (4 of 8) of gi-6323989 from
             base 300001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3 / -1

                            
Query: 276   FSHSLRQINLSYCSV 320
             FSHSL ++N+++CSV
Sbjct: 33152 FSHSLTRLNMTHCSV 33108


>GI-6323989_2 gi-6323989_2.seq Continuation (2 of 8) of gi-6323989 from
             base 100001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.2
 Identities = 14/36 (38%), Positives = 19/36 (51%)
 Frame = +1 / +2

                                                 
Query: 493   SKSSRLAAVLSSGLINLSRSSKNDATYGNNSLXMCL 600
             SK+    AVL SG   LSR S +  +YG+     C+
Sbjct: 31832 SKAEAALAVLFSGKDFLSRPSSSFCSYGSTLFTFCV 31939


>GI-14270686_6 gi-14270686_6.seq Continuation (6 of 9) of gi-14270686
            from base 500001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3 / +3

                                                  
Query: 57   LESINLSYCTEITDVSLASLSKCAKLNTLEIRGCPSVS 170
            L + +   C   T +  +S   C + N     GCPSVS
Sbjct: 6309 LRTSSTRICRNPTQIYFSSCGLCLQ*NNFHSPGCPSVS 6422


>GI-14270686_5 gi-14270686_5.seq Continuation (5 of 9) of gi-14270686 from
              base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3 / +1

                                                    
Query: 57     LESINLSYCTEITDVSLASLSKCAKLNTLEIRGCPSVS 170
              L + +   C   T +  +S   C + N     GCPSVS
Sbjct: 106309 LRTSSTRICRNPTQIYFSSCGLCLQ*NNFHSPGCPSVS 106422


>GI-7276232_2 gi-7276232_2.seq Continuation (2 of 6) of gi-7276232 from
             base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2 / +3

                               
Query: 284   *PPSDKLVILFGHRHWTP 337
             *PP  +L++L  HR W P
Sbjct: 24276 *PPGSQLLLLRSHRRWKP 24329


>GI-14627172_2 gi-14627172_2.seq Continuation (2 of 8) of gi-14627172
             from base 100001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2 / -3

                           
Query: 137   HTGDPWLPQCFICW 178
             H  D W   CFICW
Sbjct: 70518 HLCDIWWTNCFICW 70477


>GI-14389432_01 gi-14389432_01.seq Continuation (1 of 11) of gi-14389432
             from base 1
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3 / -2

                                      
Query: 150   RGCPSVSSAGLSEIAIGCRLLAELD 224
             R  P VSS  L ++++GC+L   LD
Sbjct: 54757 RKAPLVSSKALVKVSLGCQLRQPLD 54683


>GI-14270686_4 gi-14270686_4.seq Continuation (4 of 9) of gi-14270686
            from base 300001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +2 / +3

                             
Query: 551  RARTMRHMATTVSRCAC 601
            RART RH+  + +RC C
Sbjct: 9936 RARTYRHLRLSQTRCCC 9986


>GI-14270686_3 gi-14270686_3.seq Continuation (3 of 9) of gi-14270686 from
              base 200001
          Length = 110000

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +2 / +1

                               
Query: 551    RARTMRHMATTVSRCAC 601
              RART RH+  + +RC C
Sbjct: 109936 RARTYRHLRLSQTRCCC 109986


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
             chromosome III, complete c
          Length = 316613

 Score = 27.6 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = -3 / +1

                                         
Query: 742   QRIYIDIVSITSVRDTPPWARLRSTPSC 659
             Q+I+  IVSI S      W   R TP+C
Sbjct: 79624 QKIFCSIVSIISKLRILVWQLYRQTPTC 79707


>GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-6323501
             from base 800001
          Length = 110000

 Score = 24.9 bits (48), Expect(2) = 6.9
 Identities = 11/34 (32%), Positives = 17/34 (49%)
 Frame = +2 / -1

                                               
Query: 269   FPVLS*PPSDKLVILFGHRHWTPVPL*HMWASEH 370
             F  LS*P     ++ F   HW P   *+++  +H
Sbjct: 56954 FLYLS*PHDLSALLFFFEMHWLPKK**YIYTCKH 56853


 Score = 19.8 bits (37), Expect(2) = 6.9
 Identities = 7/13 (53%), Positives = 8/13 (60%)
 Frame = +2 / -1

                          
Query: 392   YYT*WLDGCSYGL 430
             YY  W DG S G+
Sbjct: 56852 YYLCWKDGPSIGV 56814


>GI-6324971_03 gi-6324971_03.seq Continuation (3 of 10) of gi-6324971
             from base 200001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -2 / -2

                               
Query: 638   DEANKAFLIISSNKHIXR 585
             D +NK FLI+ SNK + R
Sbjct: 10489 DTSNKCFLILYSNKKVTR 10436


>GI-14277709_2 gi-14277709_2.seq Continuation (2 of 7) of gi-14277709
             from base 100001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2 / +1

                                 
Query: 782   KERAQQEKFPVHWTKDIYRH 723
             KER+QQE  P  W+K+  R+
Sbjct: 53278 KERSQQESLPRDWSKN*IRN 53337


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 25498077
Number of Sequences: 122
Number of extensions: 354126
Number of successful extensions: 20563
Number of sequences better than 10.0: 20
length of query: 300
length of database: 4,402,102
effective HSP length: 44
effective length of query: 255
effective length of database: 4,396,734
effective search space: 1121167170
effective search space used: 1121167170
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)