TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/1605_B04_C07ZS5.seq
         (1801 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6323989_8 gi-6323989_8.seq Continuation (8 of 8) of gi-632398...    27  0.82
GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisia...    24  0.99
GI-6862570_6 gi-6862570_6.seq Continuation (6 of 6) of gi-686257...    31  1.4
GI-14277709_5 gi-14277709_5.seq Continuation (5 of 7) of gi-1427...    30  2.6
GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-1...    29  3.6
GI-6323501_10 gi-6323501_10.seq Continuation (10 of 10) of gi-63...    29  9.0
GI-14318439_03 gi-14318439_03.seq Continuation (3 of 11) of gi-1...    28  9.4

>GI-6323989_8 gi-6323989_8.seq Continuation (8 of 8) of gi-6323989 from
             base 700001
          Length = 84328

 Score = 27.2 bits (53), Expect(3) = 0.82
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3 / -3

                                  
Query: 674   TXXTTXAPHXRDATHXTHAQP 612
             T  TT  PH    TH TH  P
Sbjct: 84170 THHTTPTPHPHTPTHHTHTTP 84108


 Score = 23.5 bits (45), Expect(2) = 4.3
 Identities = 11/35 (31%), Positives = 12/35 (33%)
 Frame = -1 / -2

                                                
Query: 889   TPHKXHTTITQRXXXQRTHHNXXAERXXXTHTRXH 785
             TPH  HTT T        H +        T T  H
Sbjct: 84168 TPHHTHTTPTHTHTPHPHHTHTPHPHTTPTPTHPH 84064


 Score = 23.5 bits (45), Expect(2) = 4.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -3 / -2

                                  
Query: 674   TXXTTXAPHXRDATHXTHAQP 612
             T  T   PH    TH TH  P
Sbjct: 84090 TTPTPTHPHPHTHTHHTHTLP 84028


 Score = 21.2 bits (40), Expect(3) = 0.82
 Identities = 7/13 (53%), Positives = 8/13 (60%)
 Frame = -3 / -1

                          
Query: 869   NXHTTXXXTTHTP 831
             + HTT    THTP
Sbjct: 84247 HTHTTHHTHTHTP 84209


 Score = 19.4 bits (36), Expect(3) = 0.82
 Identities = 7/21 (33%), Positives = 7/21 (33%)
 Frame = -1 / -2

                                  
Query: 835   HHNXXAERXXXTHTRXHARGT 773
             HH         THT  H   T
Sbjct: 84207 HHTHTHHTHTHTHTPHHTHTT 84145


>GI-10383748 gi|10383748|ref|NC_001135.2| Saccharomyces cerevisiae
           chromosome III, complete c
          Length = 316613

 Score = 24.4 bits (47), Expect(2) = 0.99
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3 / -1

                    
Query: 207 GLARCVWXW 233
           G+  CVW W
Sbjct: 191 GVVWCVWVW 165


 Score = 24.4 bits (47), Expect(2) = 5.0
 Identities = 7/13 (53%), Positives = 8/13 (60%)
 Frame = +3 / -1

                        
Query: 201 CXGLARCVWXWCG 239
           C G+   VW WCG
Sbjct: 368 C*GVGVWVWVWCG 330


 Score = 24.4 bits (47), Expect(2) = 0.99
 Identities = 7/17 (41%), Positives = 7/17 (41%)
 Frame = +3 / -3

                            
Query: 219 CVWXWCGXXXXXACVSC 269
           CVW WC       C  C
Sbjct: 162 CVWVWCVGVGVCGCGVC 112


 Score = 24.0 bits (46), Expect(3) = 4.4
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -3 / +2

                                        
Query: 662 TXAPHXRDATHXTHAQPPANATARRRTHT 576
           T   H     H TH   P   T    THT
Sbjct: 251 THTHHTHTHPHHTHTPHPHTHTHTHHTHT 337


 Score = 21.7 bits (41), Expect(2) = 5.0
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3 / -3

                           
Query: 222 VWXWCGXXXXXACVSC 269
           VW WCG       V C
Sbjct: 207 VWVWCGCGVVCVGVVC 160


 Score = 20.8 bits (39), Expect(3) = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1 / +1

                     
Query: 889 TPHKXHTTIT 860
           TPH  HTT T
Sbjct: 58  TPHHTHTTPT 87


 Score = 19.4 bits (36), Expect(3) = 4.4
 Identities = 5/19 (26%), Positives = 7/19 (36%)
 Frame = -2 / +2

                              
Query: 843 NAHXXXXTQSAXPXHTRXH 787
           + H      +  P HT  H
Sbjct: 155 HTHTTPTHTTPHPHHTHTH 211


>GI-6862570_6 gi-6862570_6.seq Continuation (6 of 6) of gi-6862570 from
             base 500001
          Length = 62639

 Score = 30.8 bits (61), Expect = 1.4
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = -1 / -2

                                                
Query: 889   TPHKXHTTITQRXXXQRTHHNXXAERXXXTHTRXH 785
             TPH  HTT T        HH          H   H
Sbjct: 62581 TPHHTHTTPTHHTHTPHPHHTHTHTHTHTPHPHTH 62477


 Score = 23.5 bits (45), Expect(2) = 6.4
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3 / +2

                             
Query: 222   VWXWCGXXXXXACVSC 269
             VW WCG      C  C
Sbjct: 62588 VWVWCGVWVWCGCGVC 62635


 Score = 22.6 bits (43), Expect(2) = 6.4
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +3 / +2

                  
Query: 219   CVWXW 233
             CVW W
Sbjct: 62480 CVWVW 62494


>GI-14277709_5 gi-14277709_5.seq Continuation (5 of 7) of gi-14277709
             from base 400001
          Length = 110000

 Score = 29.9 bits (59), Expect = 2.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3 / +2

                                    
Query: 1215  LRGGAVCVLRHVCASLCCARPAC 1283
             L  G +C+ R +C S C     C
Sbjct: 63614 LTTGRICICRFICPSCCDCHATC 63682


>GI-14389432_04 gi-14389432_04.seq Continuation (4 of 11) of gi-14389432
             from base 300001
          Length = 110000

 Score = 29.5 bits (58), Expect = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3 / +3

                           
Query: 597   CCVCGWLRVRXVCG 638
             CC CGW+    VCG
Sbjct: 29754 CCCCGWIDACDVCG 29795


>GI-6323501_10 gi-6323501_10.seq Continuation (10 of 10) of gi-6323501
             from base 900001
          Length = 24430

 Score = 28.6 bits (56), Expect = 9.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3 / -2

                                          
Query: 662   TXAPHXRDATHXTHAQPPANATARRRTHT 576
             T  PH     H TH  P    T    THT
Sbjct: 24420 TPHPHHTHTPHHTHTHPHTTPTHHTHTHT 24334


>GI-14318439_03 gi-14318439_03.seq Continuation (3 of 11) of gi-14318439
             from base 200001
          Length = 110000

 Score = 28.1 bits (55), Expect = 9.4
 Identities = 8/31 (25%), Positives = 12/31 (37%)
 Frame = +3 / -2

                                            
Query: 633   CGVAXVWRXRGXXCXXCXGVRRSLXWXWSCV 725
             C V  +    G  C  C G+  +  W  +C 
Sbjct: 35527 CQVLILGGMLGILCSNCLGIGATFIWFTNCC 35435


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 17147700
Number of Sequences: 122
Number of extensions: 123055
Number of successful extensions: 8473
Number of sequences better than 10.0: 7
length of query: 600
length of database: 4,402,102
effective HSP length: 47
effective length of query: 552
effective length of database: 4,396,368
effective search space: 2426795136
effective search space used: 2426795136
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 55 (28.1 bits)