TBLASTX 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /home/local/jxu/web/Fgr/NCPvsSce/blast/1605_B11_C21ZS5.seq
         (882 letters)

Database: /home/pmiguel/yeast/yeast
           122 sequences; 13,206,306 total letters

Searching............................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-632201...    31  0.46
GI-14277709_4 gi-14277709_4.seq Continuation (4 of 7) of gi-1427...    29  1.6
GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-632398...    24  3.0
GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-1462...    29  3.1
GI-7839148_05 gi-7839148_05.seq Continuation (5 of 16) of gi-783...    28  4.2
GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-632...    28  4.2
GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-78...    28  5.8
GI-7839148_04 gi-7839148_04.seq Continuation (4 of 16) of gi-783...    27  8.0
GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-727623...    27  8.0
GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-783...    23  8.8

>GI-6322016_2 gi-6322016_2.seq Continuation (2 of 5) of gi-6322016 from
             base 100001
          Length = 110000

 Score = 31.3 bits (62), Expect = 0.46
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3 / -1

                                             
Query: 253   REGLGIIARRRCIYPLHVSQANSS*TSVKHRY 158
             R GL +++  RC  P+H+SQ N S   ++ R+
Sbjct: 48887 RLGLFVLSHIRCFTPIHISQVNLSPLQLQ*RF 48792


>GI-14277709_4 gi-14277709_4.seq Continuation (4 of 7) of gi-14277709
             from base 300001
          Length = 110000

 Score = 29.5 bits (58), Expect = 1.6
 Identities = 14/26 (53%), Positives = 15/26 (56%)
 Frame = +2 / +1

                                       
Query: 344   CFDILLRLQSTSYVERETPVNLLSTC 421
             CFD LLRLQS+S V R       S C
Sbjct: 34948 CFDFLLRLQSSSTV*RPDFFRYFSGC 35025


>GI-6323989_7 gi-6323989_7.seq Continuation (7 of 8) of gi-6323989 from
             base 600001
          Length = 110000

 Score = 23.5 bits (45), Expect(2) = 3.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2 / -1

                             
Query: 617   HSSSIVSPXITFNHPD 664
             H  S +SP + +NHP+
Sbjct: 48095 HLVSQISPIVEYNHPN 48048


 Score = 22.6 bits (43), Expect(2) = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1 / -3

                             
Query: 475   IWID*KYPCIALSLID 522
             +W+  K+  +ALSLID
Sbjct: 48192 MWLMIKFTAVALSLID 48145


>GI-14627172_7 gi-14627172_7.seq Continuation (7 of 8) of gi-14627172
             from base 600001
          Length = 110000

 Score = 28.6 bits (56), Expect = 3.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2 / +1

                                                
Query: 575   RSRGSKLTYACMRRHSSSIVSPXITFNHPDGKWTR 679
             ++RG  L +    R  SS +      + PDG+WT+
Sbjct: 95788 KNRGKDLEWMTKLRSKSSKIYDSSIMSLPDGRWTK 95892


>GI-7839148_05 gi-7839148_05.seq Continuation (5 of 16) of gi-7839148
             from base 400001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3 / +2

                                    
Query: 408   FYLLAYTTYMPL*GTYRHCPKAY 476
             FY++ Y    PL   YR+CP+ Y
Sbjct: 57884 FYIIFYLMQPPLL*KYRNCPRFY 57952


>GI-6323501_09 gi-6323501_09.seq Continuation (9 of 10) of gi-6323501
             from base 800001
          Length = 110000

 Score = 28.1 bits (55), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2 / +3

                                
Query: 95    GCFGNGRDISICSDAWVDP 39
             GC G+G D   C+  WV P
Sbjct: 12024 GCDGDGEDEGDCATQWVQP 12080


>GI-7839148_15 gi-7839148_15.seq Continuation (15 of 16) of gi-7839148
             from base 1400001
          Length = 110000

 Score = 27.6 bits (54), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3 / +3

                                 
Query: 111   VLRSVSCSQQSRHAMLYRCF 170
             VL+ VSC   S H + YRCF
Sbjct: 29850 VLKVVSCHHISLHDIHYRCF 29909


>GI-7839148_04 gi-7839148_04.seq Continuation (4 of 16) of gi-7839148
             from base 300001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +1 / +3

                                          
Query: 229   VRLYQVLLSRQVI*NCGSCFSP*KEGCLN 315
             +R+Y     R ++ NCG  F P KE  +N
Sbjct: 51507 IRIYYKYNERLILSNCGYSFIPRKEKFIN 51593


>GI-7276232_5 gi-7276232_5.seq Continuation (5 of 6) of gi-7276232 from
             base 400001
          Length = 110000

 Score = 27.2 bits (53), Expect = 8.0
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2 / -3

                                
Query: 377   SYVERETPVNLLSTCIHYL 433
             S +ER+TP NLL+T  H L
Sbjct: 54804 SLIERQTPKNLLATPKHQL 54748


>GI-7839148_06 gi-7839148_06.seq Continuation (6 of 16) of gi-7839148
             from base 500001
          Length = 110000

 Score = 22.6 bits (43), Expect(2) = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1 / +1

                                
Query: 148   MLCCTGVSRKFSSSLLATH 204
             MLC     R+F SS+L ++
Sbjct: 20917 MLCSRRYERRFQSSILGSY 20973


 Score = 21.7 bits (41), Expect(2) = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1 / +1

                                
Query: 10    YACRFRSGIPGSTHASEQI 66
             Y C  ++GIP  T  S Q+
Sbjct: 20740 YYCLIKNGIPTITSESAQL 20796


  Database: /home/pmiguel/yeast/yeast
    Posted date:  Oct 27, 2001  2:26 PM
  Number of letters in database: 13,206,306
  Number of sequences in database:  122
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 22564682
Number of Sequences: 122
Number of extensions: 288509
Number of successful extensions: 15934
Number of sequences better than 10.0: 10
length of query: 294
length of database: 4,402,102
effective HSP length: 44
effective length of query: 249
effective length of database: 4,396,734
effective search space: 1094786766
effective search space used: 1094786766
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)