BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1605_B05_C09ZS5
.seq
(388 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006AD06F.B mgmy006aD06f.b 14 536 32 0.057
MGMY004DD06F.B mgmy004dD06f.b 29 311 32 0.057
MGMY004AB10F.B mgmy004aB10f.b 22 364 28 0.89
MGCM001DG11F.B mgcm001dG11f.b 3 515 28 0.89
MGAP008DA01F.B mgap008dA01f.b 139 634 28 0.89
MGMY005BD04F.B mgmy005bD04f.b 10 478 26 3.5
MGMY003BB05F.B mgmy003bB05f.b 14 513 26 3.5
MGMY002DH09F.B mgmy002dH09f.b 15 460 26 3.5
MGMY002AB02F.B mgmy002aB02f.b 32 502 26 3.5
MGCM002DH06F.B mgcm002dH06f.b 23 391 26 3.5
MGAP010DF02F.B mgap010dF02f.b 18 514 26 3.5
MGAP010CD07F.B mgap010cD07f.b 108 437 26 3.5
MGAP007BG10F.B mgap007bG10f.b 23 556 26 3.5
MGAP007BE06F.B mgap007bE06f.b 23 530 26 3.5
MGAP007BB05F.B mgap007bB05f.b 19 513 26 3.5
>MGMY006AD06F.B mgmy006aD06f.b 14 536
Length = 454
Score = 32.2 bits (16), Expect = 0.057
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 7 tgtcaccaccctcgacatcg 26
|||||||||||| |||||||
Sbjct: 304 tgtcaccacccttgacatcg 285
>MGMY004DD06F.B mgmy004dD06f.b 29 311
Length = 251
Score = 32.2 bits (16), Expect = 0.057
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 3 ttggtgtcaccaccctcgac 22
|||||| |||||||||||||
Sbjct: 75 ttggtgccaccaccctcgac 56
>MGMY004AB10F.B mgmy004aB10f.b 22 364
Length = 278
Score = 28.2 bits (14), Expect = 0.89
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 accatccccgtcat 96
||||||||||||||
Sbjct: 151 accatccccgtcat 164
>MGCM001DG11F.B mgcm001dG11f.b 3 515
Length = 457
Score = 28.2 bits (14), Expect = 0.89
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 agatcactggcaag 64
||||||||||||||
Sbjct: 431 agatcactggcaag 444
>MGAP008DA01F.B mgap008dA01f.b 139 634
Length = 473
Score = 28.2 bits (14), Expect = 0.89
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ggcgagactattgt 123
||||||||||||||
Sbjct: 336 ggcgagactattgt 349
>MGMY005BD04F.B mgmy005bD04f.b 10 478
Length = 439
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 215 gttgtcaaggcca 227
|||||||||||||
Sbjct: 13 gttgtcaaggcca 25
>MGMY003BB05F.B mgmy003bB05f.b 14 513
Length = 447
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 250 cctgtccatggcc 262
|||||||||||||
Sbjct: 347 cctgtccatggcc 359
>MGMY002DH09F.B mgmy002dH09f.b 15 460
Length = 419
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 59 ggcaaggccaacc 71
|||||||||||||
Sbjct: 305 ggcaaggccaacc 317
>MGMY002AB02F.B mgmy002aB02f.b 32 502
Length = 417
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 250 cctgtccatggcc 262
|||||||||||||
Sbjct: 148 cctgtccatggcc 160
>MGCM002DH06F.B mgcm002dH06f.b 23 391
Length = 311
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 gaccatccccgtc 94
|||||||||||||
Sbjct: 58 gaccatccccgtc 70
>MGAP010DF02F.B mgap010dF02f.b 18 514
Length = 443
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 gaccatccccgtc 94
|||||||||||||
Sbjct: 420 gaccatccccgtc 432
>MGAP010CD07F.B mgap010cD07f.b 108 437
Length = 329
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 155 cagatccccgacg 167
|||||||||||||
Sbjct: 293 cagatccccgacg 305
>MGAP007BG10F.B mgap007bG10f.b 23 556
Length = 481
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 gaccatccccgtc 94
|||||||||||||
Sbjct: 186 gaccatccccgtc 198
>MGAP007BE06F.B mgap007bE06f.b 23 530
Length = 455
Score = 26.3 bits (13), Expect = 3.5
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 33 ccgagaccttcgttgct 49
||||||||||| |||||
Sbjct: 107 ccgagaccttctttgct 91
>MGAP007BB05F.B mgap007bB05f.b 19 513
Length = 434
Score = 26.3 bits (13), Expect = 3.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 gaccatccccgtc 94
|||||||||||||
Sbjct: 413 gaccatccccgtc 425
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 243
Number of Sequences: 2061
Number of extensions: 243
Number of successful extensions: 65
Number of sequences better than 10.0: 15
length of query: 388
length of database: 785,635
effective HSP length: 14
effective length of query: 374
effective length of database: 756,781
effective search space: 283036094
effective search space used: 283036094
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)