BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1605_B11_C21ZS5
.seq
         (473 letters)

Database: /phillip/Ncr/MgIFAFSall
           2061 sequences; 785,635 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGMY004DF07F.B mgmy004dF07f.b 41 416                                   26  4.3
MGMY002CG09F.B mgmy002cG09f.b 27 550                                   26  4.3
MGCM002CB04F.B mgcm002cB04f.b 18 451                                   26  4.3

>MGMY004DF07F.B mgmy004dF07f.b 41 416
          Length = 368

 Score = 26.3 bits (13), Expect = 4.3
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 181 caagtccttctct 193
           |||||||||||||
Sbjct: 121 caagtccttctct 109



>MGMY002CG09F.B mgmy002cG09f.b 27 550
          Length = 471

 Score = 26.3 bits (13), Expect = 4.3
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 41  aaaccgacttgta 53
           |||||||||||||
Sbjct: 308 aaaccgacttgta 296



>MGCM002CB04F.B mgcm002cB04f.b 18 451
          Length = 373

 Score = 26.3 bits (13), Expect = 4.3
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                       
Query: 47 acttgtactgcga 59
          |||||||||||||
Sbjct: 90 acttgtactgcga 78



  Database: /phillip/Ncr/MgIFAFSall
    Posted date:  Feb 13, 2002 12:25 PM
  Number of letters in database: 785,635
  Number of sequences in database:  2061
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140
Number of Sequences: 2061
Number of extensions: 140
Number of successful extensions: 18
Number of sequences better than 10.0: 3
length of query: 473
length of database: 785,635
effective HSP length: 14
effective length of query: 459
effective length of database: 756,781
effective search space: 347362479
effective search space used: 347362479
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)