TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1605_B11_C21ZS5
.seq
(473 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003BE06F.B mgmy003bE06f.b 11 480 26 0.33
MGCM001DB03F.B mgcm001dB03f.b 13 451 26 0.45
MGAP008CC04F.B mgap008cC04f.b 26 488 24 1.2
MGMY004CC12F.B mgmy004cC12f.b 31 376 24 1.2
MGCM002CG11F.B mgcm002cG11f.b 19 517 24 2.2
MGAP007BE06F.B mgap007bE06f.b 23 530 24 2.2
MGAP008DE09F.B mgap008dE09f.b 13 570 24 2.2
MGCM002AC02F.B mgcm002aC02f.b 153 415 23 4.1
MGMY001CB07F.B mgmy001cB07f.b 122 405 23 4.1
MGAP007BB10F.B mgap007bB10f.b 17 590 23 4.1
MGMY002AH10F.B mgmy002aH10f.b 29 544 22 5.7
MGMY001DC12F.B mgmy001dC12f.b 20 464 22 5.7
MGMY004AC11F.B mgmy004aC11f.b 25 659 22 5.7
MGMY002CF02F.B mgmy002cF02f.b 6 431 22 5.7
MGAP008DH05F.B mgap008dH05f.b 16 692 22 7.8
MGMY001BD01F.B mgmy001bD01f.b 34 421 22 7.8
MGAP008DC06F.B mgap008dC06f.b 15 624 22 7.8
MGMY003AH05F.B mgmy003aH05f.b 1 482 22 7.8
MGMY002AB10F.B mgmy002aB10f.b 34 511 22 7.8
MGAP010CH08F.B mgap010cH08f.b 103 545 22 7.8
MGMY006DE04F.B mgmy006dE04f.b 18 483 22 7.8
MGMY001AA12F.B mgmy001aA12f.b 4 598 22 7.8
MGCM002DA03F.B mgcm002dA03f.b 0 439 22 7.8
MGMY002CH12F.B mgmy002cH12f.b 37 400 22 7.8
MGMY003AH11F.B mgmy003aH11f.b 1 444 22 7.8
MGCM002CH10F.B mgcm002cH10f.b 24 440 21 8.7
>MGMY003BE06F.B mgmy003bE06f.b 11 480
Length = 401
Score = 26.3 bits (51), Expect = 0.33
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1 / -3
Query: 391 PIDIAPKPIWID*KYPCIALSLID 462
P+D+AP+P+ + + +AL +ID
Sbjct: 105 PVDLAPQPVILTRQGAVLALQVID 34
>MGCM001DB03F.B mgcm001dB03f.b 13 451
Length = 373
Score = 25.8 bits (50), Expect = 0.45
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 131 CLRHMERIDASPSCDYTKSFSRDRSSRI 214
C RH R ASPS TK F R+S +
Sbjct: 1 CTRHRLRQTASPSYYGTKPFLARRNSTL 84
>MGAP008CC04F.B mgap008cC04f.b 26 488
Length = 419
Score = 24.4 bits (47), Expect = 1.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3 / -2
Query: 174 IIPSPSLETGHLELRVMFQSLERRVLKHEYGRDT*ITVLTSYFAYRV 314
++ + + G LEL Q L R+V + E G D + +L RV
Sbjct: 304 VVGTDTSSDGELELLGASQPLSRKVSRVEGGGDDDLGILQLLVEGRV 164
>MGMY004CC12F.B mgmy004cC12f.b 31 376
Length = 345
Score = 24.4 bits (47), Expect = 1.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3 / +1
Query: 60 IAVQVGFFRLFWKW 19
I V GFF +FW W
Sbjct: 16 IFVSQGFFCIFWLW 57
>MGCM002CG11F.B mgcm002cG11f.b 19 517
Length = 426
Score = 23.5 bits (45), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +3 / -2
Query: 201 GHLELRVMFQSLERRVLKHEYGRDT*ITVLTSYFAYRV 314
G LEL Q L R+V + E G D + +L RV
Sbjct: 419 GELELLGASQPLSRKVSRVEGGGDDDLGILQLLVEGRV 306
>MGAP007BE06F.B mgap007bE06f.b 23 530
Length = 455
Score = 23.5 bits (45), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 203 TCLERRTWYNRTTEMHLS 150
+CL+ T Y RTT +H S
Sbjct: 223 SCLQWCTAYRRTTRVHWS 276
>MGAP008DE09F.B mgap008dE09f.b 13 570
Length = 490
Score = 23.5 bits (45), Expect = 2.2
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = +2 / +2
Query: 314 TSYVERETPVNLLSTCIHYLYASLRYLSTLPQSLFGSIRNTHV 442
+SY + N+ S H+L+ S+ SLF ++ T V
Sbjct: 212 SSYAQTRNVENVYSVIPHFLHWSIHVTRQSGSSLFYGLQVTPV 340
>MGCM002AC02F.B mgcm002aC02f.b 153 415
Length = 224
Score = 22.6 bits (43), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1 / -2
Query: 361 HTLPICLSKVPIDIAPKPIWI 423
HTL +K+PI + +P W+
Sbjct: 199 HTLRSPAAKLPISVCIQPGWM 137
>MGMY001CB07F.B mgmy001cB07f.b 122 405
Length = 283
Score = 22.6 bits (43), Expect = 4.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / -3
Query: 367 LPICLSKVPIDIAPKPI 417
LP+ + +PID+ P P+
Sbjct: 197 LPLPSTSLPIDLEPPPL 147
>MGAP007BB10F.B mgap007bB10f.b 17 590
Length = 512
Score = 22.6 bits (43), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 18 TISKTT*RNRLVLRSVSCSQQS 83
TIS TT R++ RSV +QQ+
Sbjct: 7 TISSTTKSPRVLSRSVRFTQQT 72
>MGMY002AH10F.B mgmy002aH10f.b 29 544
Length = 342
Score = 22.1 bits (42), Expect = 5.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1 / -3
Query: 7 EISRPFPKQPEETD 48
E +RP+PK+P+ D
Sbjct: 229 ENARPWPKKPQPKD 188
>MGMY001DC12F.B mgmy001dC12f.b 20 464
Length = 392
Score = 22.1 bits (42), Expect = 5.7
Identities = 8/26 (30%), Positives = 17/26 (64%)
Frame = +3 / +2
Query: 141 TWSG*MHLRRAIIPSPSLETGHLELR 218
+WS + +R ++PSP+L + + +R
Sbjct: 230 SWSRTVRVRLRMLPSPTLPSVSVPVR 307
>MGMY004AC11F.B mgmy004aC11f.b 25 659
Length = 570
Score = 22.1 bits (42), Expect = 5.7
Identities = 8/26 (30%), Positives = 17/26 (64%)
Frame = +3 / +2
Query: 141 TWSG*MHLRRAIIPSPSLETGHLELR 218
+WS + +R ++PSP+L + + +R
Sbjct: 305 SWSRTVRVRLRMLPSPTLPSVSVPVR 382
>MGMY002CF02F.B mgmy002cF02f.b 6 431
Length = 404
Score = 22.1 bits (42), Expect = 5.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / -2
Query: 159 HLRRAIIPSPSLETGHLEL 215
HLR A++ + +LE +EL
Sbjct: 229 HLRVALVVARTLEPNTVEL 173
>MGAP008DH05F.B mgap008dH05f.b 16 692
Length = 610
Score = 21.7 bits (41), Expect = 7.8
Identities = 10/22 (45%), Positives = 11/22 (49%)
Frame = +3 / +3
Query: 156 MHLRRAIIPSPSLETGHLELRV 221
+HLRR P P E H RV
Sbjct: 294 LHLRRRHGPHPRREERHYRHRV 359
>MGMY001BD01F.B mgmy001bD01f.b 34 421
Length = 354
Score = 21.7 bits (41), Expect = 7.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / +2
Query: 112 VKHRYNIACL 83
V+ RYNI CL
Sbjct: 95 VRQRYNITCL 124
>MGAP008DC06F.B mgap008dC06f.b 15 624
Length = 543
Score = 21.7 bits (41), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +1 / -1
Query: 55 CDLLAALNNRGMLCCTGVSRKFSSSLLAT 141
CD + +C G +R+ SSLLAT
Sbjct: 270 CDPASPPAREWRICDLGPTRRRWSSLLAT 184
>MGMY003AH05F.B mgmy003aH05f.b 1 482
Length = 441
Score = 21.7 bits (41), Expect = 7.8
Identities = 7/18 (38%), Positives = 9/18 (49%)
Frame = +3 / +3
Query: 84 RHAMLYRCFTEVQLEFAC 137
RH RC + L+F C
Sbjct: 258 RHLSSQRCHIQFDLDFRC 311
>MGMY002AB10F.B mgmy002aB10f.b 34 511
Length = 440
Score = 21.7 bits (41), Expect = 7.8
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +2 / -1
Query: 110 HGSSARVCLRHMERI 154
H VCL H+ERI
Sbjct: 401 HRHKRLVCLAHVERI 357
>MGAP010CH08F.B mgap010cH08f.b 103 545
Length = 442
Score = 21.7 bits (41), Expect = 7.8
Identities = 8/23 (34%), Positives = 12/23 (51%)
Frame = +3 / -1
Query: 177 IPSPSLETGHLELRVMFQSLERR 245
+P P + G V++ SL RR
Sbjct: 184 VPDPEMTNGCEPESVVWNSLRRR 116
>MGMY006DE04F.B mgmy006dE04f.b 18 483
Length = 400
Score = 21.7 bits (41), Expect = 7.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 355 YLHTLPICLSKVPI 396
YL TLPI LSK+ I
Sbjct: 119 YLPTLPIQLSKLLI 160
>MGMY001AA12F.B mgmy001aA12f.b 4 598
Length = 554
Score = 21.7 bits (41), Expect = 7.8
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +2 / -1
Query: 110 HGSSARVCLRHMERI 154
H VCL H+ERI
Sbjct: 401 HRHKRLVCLAHVERI 357
>MGCM002DA03F.B mgcm002dA03f.b 0 439
Length = 386
Score = 21.7 bits (41), Expect = 7.8
Identities = 9/21 (42%), Positives = 10/21 (46%)
Frame = -1 / -3
Query: 74 RAANRSQYKSVSSGCFGNGRD 12
R +R VSSGC G D
Sbjct: 303 RDIDREPILDVSSGCARRGND 241
>MGMY002CH12F.B mgmy002cH12f.b 37 400
Length = 343
Score = 21.7 bits (41), Expect = 7.8
Identities = 6/14 (42%), Positives = 10/14 (70%)
Frame = +2 / +2
Query: 350 LSTCIHYLYASLRY 391
++ CIH+LY L +
Sbjct: 158 MAVCIHFLYEPLAH 199
>MGMY003AH11F.B mgmy003aH11f.b 1 444
Length = 403
Score = 21.7 bits (41), Expect = 7.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1 / +3
Query: 367 LPICLSKVPI 396
LP CLS PI
Sbjct: 54 LPACLSHSPI 83
>MGCM002CH10F.B mgcm002cH10f.b 24 440
Length = 345
Score = 20.8 bits (39), Expect(2) = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1 / +3
Query: 361 HTLPICLSKVPIDIAPKP 414
+TLP VP++ AP+P
Sbjct: 243 YTLPYPNPPVPLNDAPEP 296
Score = 18.9 bits (35), Expect(2) = 8.7
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +1 / +3
Query: 100 TGVSRKFSSSLL 135
TGV R +SSS L
Sbjct: 105 TGVRRDYSSSKL 140
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 912141
Number of Sequences: 2061
Number of extensions: 11019
Number of successful extensions: 324
Number of sequences better than 10.0: 26
length of query: 157
length of database: 261,878
effective HSP length: 34
effective length of query: 123
effective length of database: 191,804
effective search space: 23591892
effective search space used: 23591892
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 40 (21.2 bits)