BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1605_C02_E03ZS5
.seq
(136 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004CC05F.B mgmy004cC05f.b 49 465 28 0.29
MGMY003AF11F.B mgmy003aF11f.b 2 267 28 0.29
MGAP010DH08F.B mgap010dH08f.b 190 613 28 0.29
MGMY003AG09F.B mgmy003aG09f.b 2 415 26 1.2
MGMY002AG09F.B mgmy002aG09f.b 32 554 26 1.2
MGMY003BE08F.B mgmy003bE08f.b 13 373 24 4.6
MGAP010DE02F.B mgap010dE02f.b 31 548 24 4.6
MGAP008CD04F.B mgap008cD04f.b 26 480 24 4.6
>MGMY004CC05F.B mgmy004cC05f.b 49 465
Length = 416
Score = 28.2 bits (14), Expect = 0.29
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 48 cgaggagctcaaccctta 65
|||||||||||| |||||
Sbjct: 363 cgaggagctcaagcctta 380
>MGMY003AF11F.B mgmy003aF11f.b 2 267
Length = 227
Score = 28.2 bits (14), Expect = 0.29
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 catgtaagggttga 32
||||||||||||||
Sbjct: 34 catgtaagggttga 21
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 56 tcaacccttacat 68
|||||||||||||
Sbjct: 21 tcaacccttacat 33
>MGAP010DH08F.B mgap010dH08f.b 190 613
Length = 386
Score = 28.2 bits (14), Expect = 0.29
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 tcgtgggcgaggag 54
||||||||||||||
Sbjct: 73 tcgtgggcgaggag 86
>MGMY003AG09F.B mgmy003aG09f.b 2 415
Length = 388
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 11 gccttgcgcatgt 23
|||||||||||||
Sbjct: 267 gccttgcgcatgt 279
>MGMY002AG09F.B mgmy002aG09f.b 32 554
Length = 479
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 11 gccttgcgcatgt 23
|||||||||||||
Sbjct: 267 gccttgcgcatgt 279
>MGMY003BE08F.B mgmy003bE08f.b 13 373
Length = 306
Score = 24.3 bits (12), Expect = 4.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 13 cttgcgcatgta 24
||||||||||||
Sbjct: 181 cttgcgcatgta 170
>MGAP010DE02F.B mgap010dE02f.b 31 548
Length = 474
Score = 24.3 bits (12), Expect = 4.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 84 tgaaaatgggct 95
||||||||||||
Sbjct: 131 tgaaaatgggct 120
>MGAP008CD04F.B mgap008cD04f.b 26 480
Length = 421
Score = 24.3 bits (12), Expect = 4.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 85 gaaaatgggctt 96
||||||||||||
Sbjct: 137 gaaaatgggctt 148
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46
Number of Sequences: 2061
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 9
length of query: 136
length of database: 785,635
effective HSP length: 13
effective length of query: 123
effective length of database: 758,842
effective search space: 93337566
effective search space used: 93337566
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)