BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1605_G06_M11ZS5
.seq
         (339 letters)

Database: /phillip/Ncr/MgIFAFSall
           2061 sequences; 785,635 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGMY006DD12F.B mgmy006dD12f.b 18 534                                   34  0.013
MGMY006CF12F.B mgmy006cF12f.b 37 148                                   34  0.013
MGMY002DF01F.B mgmy002dF01f.b 27 381                                   34  0.013
MGMY001AA06F.B mgmy001aA06f.b 167 675                                  34  0.013
MGMY004AA12F.B mgmy004aA12f.b 148 633                                  32  0.050
MGCM002DG09F.B mgcm002dG09f.b 24 477                                   30  0.20
MGMY003DH12F.B mgmy003dH12f.b 93 495                                   28  0.78
MGCM002AH05F.B mgcm002aH05f.b 2 557                                    28  0.78
MGMY005CC01F.B mgmy005cC01f.b 0 394                                    26  3.1
MGMY004CE09F.B mgmy004cE09f.b 267 399                                  26  3.1
MGMY003BD03F.B mgmy003bD03f.b 12 417                                   26  3.1
MGCM001DF01F.B mgcm001dF01f.b 1 381                                    26  3.1

>MGMY006DD12F.B mgmy006dD12f.b 18 534
          Length = 451

 Score = 34.2 bits (17), Expect = 0.013
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 83 cctccaccgccaaaatg 99
          |||||||||||||||||
Sbjct: 51 cctccaccgccaaaatg 67



>MGMY006CF12F.B mgmy006cF12f.b 37 148
          Length = 101

 Score = 34.2 bits (17), Expect = 0.013
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 83 cctccaccgccaaaatg 99
          |||||||||||||||||
Sbjct: 24 cctccaccgccaaaatg 40



>MGMY002DF01F.B mgmy002dF01f.b 27 381
          Length = 310

 Score = 34.2 bits (17), Expect = 0.013
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 83 cctccaccgccaaaatg 99
          |||||||||||||||||
Sbjct: 19 cctccaccgccaaaatg 35



>MGMY001AA06F.B mgmy001aA06f.b 167 675
          Length = 453

 Score = 34.2 bits (17), Expect = 0.013
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 83 cctccaccgccaaaatg 99
          |||||||||||||||||
Sbjct: 54 cctccaccgccaaaatg 70



>MGMY004AA12F.B mgmy004aA12f.b 148 633
          Length = 427

 Score = 32.2 bits (16), Expect = 0.050
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 88  accgccaaaatgtcca 103
           ||||||||||||||||
Sbjct: 26  accgccaaaatgtcca 41



>MGCM002DG09F.B mgcm002dG09f.b 24 477
          Length = 357

 Score = 30.2 bits (15), Expect = 0.20
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 73 tgccctttctcctcc 87
          |||||||||||||||
Sbjct: 73 tgccctttctcctcc 87



>MGMY003DH12F.B mgmy003dH12f.b 93 495
          Length = 402

 Score = 28.2 bits (14), Expect = 0.78
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 89  ccgccaaaatgtcc 102
           ||||||||||||||
Sbjct: 113 ccgccaaaatgtcc 126



>MGCM002AH05F.B mgcm002aH05f.b 2 557
          Length = 517

 Score = 28.2 bits (14), Expect = 0.78
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 213 caccacttcttgct 226
           ||||||||||||||
Sbjct: 304 caccacttcttgct 291



>MGMY005CC01F.B mgmy005cC01f.b 0 394
          Length = 351

 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 144 ccagtcactcctt 156
           |||||||||||||
Sbjct: 18  ccagtcactcctt 30



>MGMY004CE09F.B mgmy004cE09f.b 267 399
          Length = 132

 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 274 tcgaccgatcctg 286
           |||||||||||||
Sbjct: 21  tcgaccgatcctg 33



>MGMY003BD03F.B mgmy003bD03f.b 12 417
          Length = 338

 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 285 tgcccacaacctg 297
           |||||||||||||
Sbjct: 66  tgcccacaacctg 78



>MGCM001DF01F.B mgcm001dF01f.b 1 381
          Length = 328

 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 144 ccagtcactcctt 156
           |||||||||||||
Sbjct: 27  ccagtcactcctt 39



  Database: /phillip/Ncr/MgIFAFSall
    Posted date:  Feb 13, 2002 12:25 PM
  Number of letters in database: 785,635
  Number of sequences in database:  2061
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171
Number of Sequences: 2061
Number of extensions: 171
Number of successful extensions: 48
Number of sequences better than 10.0: 12
length of query: 339
length of database: 785,635
effective HSP length: 13
effective length of query: 326
effective length of database: 758,842
effective search space: 247382492
effective search space used: 247382492
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)