BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_A03_A06ZS5
.seq
(563 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM002CD02F.B mgcm002cD02f.b 18 493 32 0.084
MGMY003AA11F.B mgmy003aA11f.b 2 199 30 0.33
MGMY005BE08F.B mgmy005bE08f.b 18 176 28 1.3
MGMY001AE11F.B mgmy001aE11f.b 30 656 28 1.3
MGCM002CA07F.B mgcm002cA07f.b 23 511 28 1.3
MGMY005BG10F.B mgmy005bG10f.b 47 334 26 5.2
MGMY004CE09F.B mgmy004cE09f.b 267 399 26 5.2
MGMY004CE01F.B mgmy004cE01f.b 96 441 26 5.2
MGMY003DH12F.B mgmy003dH12f.b 93 495 26 5.2
MGMY003CE01F.B mgmy003cE01f.b 40 413 26 5.2
MGMY003BB08F.B mgmy003bB08f.b 14 586 26 5.2
MGMY002CB09F.B mgmy002cB09f.b 16 567 26 5.2
MGAP010CF07F.B mgap010cF07f.b 37 480 26 5.2
MGAP007CB01F.B mgap007cB01f.b 20 542 26 5.2
>MGCM002CD02F.B mgcm002cD02f.b 18 493
Length = 402
Score = 32.2 bits (16), Expect = 0.084
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 287 gtggtcgactttttga 302
||||||||||||||||
Sbjct: 144 gtggtcgactttttga 159
>MGMY003AA11F.B mgmy003aA11f.b 2 199
Length = 159
Score = 30.2 bits (15), Expect = 0.33
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 470 gacctgatcgtcaac 484
|||||||||||||||
Sbjct: 9 gacctgatcgtcaac 23
>MGMY005BE08F.B mgmy005bE08f.b 18 176
Length = 137
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cctgccccagcttc 185
||||||||||||||
Sbjct: 94 cctgccccagcttc 107
>MGMY001AE11F.B mgmy001aE11f.b 30 656
Length = 584
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 316 caacggcgaaagtg 329
||||||||||||||
Sbjct: 484 caacggcgaaagtg 497
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 365 tctgtcaactttg 377
|||||||||||||
Sbjct: 421 tctgtcaactttg 409
>MGCM002CA07F.B mgcm002cA07f.b 23 511
Length = 417
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 542 accgttgttcccgc 555
||||||||||||||
Sbjct: 186 accgttgttcccgc 173
>MGMY005BG10F.B mgmy005bG10f.b 47 334
Length = 255
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 143 aaggctggccagg 155
|||||||||||||
Sbjct: 241 aaggctggccagg 229
>MGMY004CE09F.B mgmy004cE09f.b 267 399
Length = 132
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 61 catcatcgaccga 73
|||||||||||||
Sbjct: 16 catcatcgaccga 28
>MGMY004CE01F.B mgmy004cE01f.b 96 441
Length = 345
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 381 gatacgatgaaat 393
|||||||||||||
Sbjct: 239 gatacgatgaaat 227
>MGMY003DH12F.B mgmy003dH12f.b 93 495
Length = 402
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 393 tccgccaaaatgt 405
|||||||||||||
Sbjct: 112 tccgccaaaatgt 124
>MGMY003CE01F.B mgmy003cE01f.b 40 413
Length = 351
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 50 gtttgcctgcaca 62
|||||||||||||
Sbjct: 343 gtttgcctgcaca 331
>MGMY003BB08F.B mgmy003bB08f.b 14 586
Length = 518
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 177 cccagcttctcca 189
|||||||||||||
Sbjct: 466 cccagcttctcca 454
>MGMY002CB09F.B mgmy002cB09f.b 16 567
Length = 488
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 384 acgatgaaatccg 396
|||||||||||||
Sbjct: 441 acgatgaaatccg 429
>MGAP010CF07F.B mgap010cF07f.b 37 480
Length = 403
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 150 gccaggagcgcct 162
|||||||||||||
Sbjct: 98 gccaggagcgcct 110
>MGAP007CB01F.B mgap007cB01f.b 20 542
Length = 457
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 171 tcctgccccagct 183
|||||||||||||
Sbjct: 46 tcctgccccagct 58
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 282
Number of Sequences: 2061
Number of extensions: 282
Number of successful extensions: 74
Number of sequences better than 10.0: 14
length of query: 563
length of database: 785,635
effective HSP length: 14
effective length of query: 549
effective length of database: 756,781
effective search space: 415472769
effective search space used: 415472769
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)