BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_C07_E14ZS5
.seq
(469 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY002BF08F.B mgmy002bF08f.b 16 629 28 1.1
MGMY001CA05F.B mgmy001cA05f.b 16 604 28 1.1
MGMY001BA09F.B mgmy001bA09f.b 27 323 28 1.1
MGCM002CH02F.B mgcm002cH02f.b 31 519 28 1.1
MGMY003AH11F.B mgmy003aH11f.b 1 444 26 4.3
MGAP010DA05F.B mgap010dA05f.b 141 480 26 4.3
>MGMY002BF08F.B mgmy002bF08f.b 16 629
Length = 545
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gtgcgccaaaactg 202
||||||||||||||
Sbjct: 82 gtgcgccaaaactg 95
>MGMY001CA05F.B mgmy001cA05f.b 16 604
Length = 521
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gtgcgccaaaactg 202
||||||||||||||
Sbjct: 84 gtgcgccaaaactg 97
>MGMY001BA09F.B mgmy001bA09f.b 27 323
Length = 274
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 ttgcgcctcaacgg 288
||||||||||||||
Sbjct: 164 ttgcgcctcaacgg 177
>MGCM002CH02F.B mgcm002cH02f.b 31 519
Length = 429
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 357 acagagttgactcg 370
||||||||||||||
Sbjct: 2 acagagttgactcg 15
>MGMY003AH11F.B mgmy003aH11f.b 1 444
Length = 403
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 370 gcgtcgctatcga 382
|||||||||||||
Sbjct: 387 gcgtcgctatcga 375
>MGAP010DA05F.B mgap010dA05f.b 141 480
Length = 339
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 199 actgtgttttctg 211
|||||||||||||
Sbjct: 169 actgtgttttctg 181
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151
Number of Sequences: 2061
Number of extensions: 151
Number of successful extensions: 28
Number of sequences better than 10.0: 6
length of query: 469
length of database: 785,635
effective HSP length: 14
effective length of query: 455
effective length of database: 756,781
effective search space: 344335355
effective search space used: 344335355
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)