BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_E02_I04ZS5
.seq
(395 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006DG01F.B mgmy006dG01f.b 31 487 36 0.004
MGMY006DD08F.B mgmy006dD08f.b 17 604 28 0.91
MGAP007BF02F.B mgap007bF02f.b 23 573 28 0.91
MGAP007BA06F.B mgap007bA06f.b 18 543 28 0.91
MGAP007AA04F.B mgap007aA04f.b 58 453 28 0.91
MGMY001AC11F.B mgmy001aC11f.b 162 612 26 3.6
MGCM002CE09F.B mgcm002cE09f.b 20 529 26 3.6
MGAP008DE05F.B mgap008dE05f.b 45 529 26 3.6
>MGMY006DG01F.B mgmy006dG01f.b 31 487
Length = 405
Score = 36.2 bits (18), Expect = 0.004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 114 gcatatgcaaatgcaagg 131
||||||||||||||||||
Sbjct: 137 gcatatgcaaatgcaagg 154
>MGMY006DD08F.B mgmy006dD08f.b 17 604
Length = 522
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 caaggaggaataag 197
||||||||||||||
Sbjct: 236 caaggaggaataag 223
>MGAP007BF02F.B mgap007bF02f.b 23 573
Length = 498
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 tcatctcaaacatt 215
||||||||||||||
Sbjct: 184 tcatctcaaacatt 197
>MGAP007BA06F.B mgap007bA06f.b 18 543
Length = 465
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 tcatctcaaacatt 215
||||||||||||||
Sbjct: 184 tcatctcaaacatt 197
>MGAP007AA04F.B mgap007aA04f.b 58 453
Length = 395
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 tcatctcaaacatt 215
||||||||||||||
Sbjct: 180 tcatctcaaacatt 193
>MGMY001AC11F.B mgmy001aC11f.b 162 612
Length = 412
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 79 cgaacccaagaca 91
|||||||||||||
Sbjct: 32 cgaacccaagaca 44
>MGCM002CE09F.B mgcm002cE09f.b 20 529
Length = 438
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 153 aggatgagtccaa 165
|||||||||||||
Sbjct: 121 aggatgagtccaa 133
>MGAP008DE05F.B mgap008dE05f.b 45 529
Length = 460
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 207 tcaaacatttgga 219
|||||||||||||
Sbjct: 61 tcaaacatttgga 73
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145
Number of Sequences: 2061
Number of extensions: 145
Number of successful extensions: 33
Number of sequences better than 10.0: 8
length of query: 395
length of database: 785,635
effective HSP length: 14
effective length of query: 381
effective length of database: 756,781
effective search space: 288333561
effective search space used: 288333561
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)