BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_F04_K08ZS5
.seq
(453 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004AB02F.B mgmy004aB02f.b 27 584 26 4.1
MGMY003AC11F.B mgmy003aC11f.b 2 319 26 4.1
MGMY002DC02F.B mgmy002dC02f.b 27 410 26 4.1
MGCM002DH05F.B mgcm002dH05f.b 24 411 26 4.1
MGCM002DG10F.B mgcm002dG10f.b 22 327 26 4.1
MGCM002DG02F.B mgcm002dG02f.b 2 479 26 4.1
MGAP008CC02F.B mgap008cC02f.b 24 497 26 4.1
MGAP007CH12F.B mgap007cH12f.b 17 597 26 4.1
>MGMY004AB02F.B mgmy004aB02f.b 27 584
Length = 506
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 202 tggtgaaagctct 214
|||||||||||||
Sbjct: 128 tggtgaaagctct 116
>MGMY003AC11F.B mgmy003aC11f.b 2 319
Length = 279
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 437 gccttgtggagat 449
|||||||||||||
Sbjct: 36 gccttgtggagat 24
>MGMY002DC02F.B mgmy002dC02f.b 27 410
Length = 339
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 331 tcgaggtcaagag 343
|||||||||||||
Sbjct: 125 tcgaggtcaagag 137
>MGCM002DH05F.B mgcm002dH05f.b 24 411
Length = 316
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 434 tcggccttgtgga 446
|||||||||||||
Sbjct: 160 tcggccttgtgga 172
>MGCM002DG10F.B mgcm002dG10f.b 22 327
Length = 234
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 175 gcaagagaagcaa 187
|||||||||||||
Sbjct: 104 gcaagagaagcaa 92
>MGCM002DG02F.B mgcm002dG02f.b 2 479
Length = 413
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 331 tcgaggtcaagag 343
|||||||||||||
Sbjct: 181 tcgaggtcaagag 193
>MGAP008CC02F.B mgap008cC02f.b 24 497
Length = 435
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 437 gccttgtggagat 449
|||||||||||||
Sbjct: 124 gccttgtggagat 112
>MGAP007CH12F.B mgap007cH12f.b 17 597
Length = 513
Score = 26.3 bits (13), Expect = 4.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 130 gttgaaccgcaag 142
|||||||||||||
Sbjct: 479 gttgaaccgcaag 491
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168
Number of Sequences: 2061
Number of extensions: 168
Number of successful extensions: 69
Number of sequences better than 10.0: 8
length of query: 453
length of database: 785,635
effective HSP length: 14
effective length of query: 439
effective length of database: 756,781
effective search space: 332226859
effective search space used: 332226859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)