BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_F11_K22ZS5
.seq
(457 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006CG08F.B mgmy006cG08f.b 310 539 28 1.1
MGMY006BE01F.B mgmy006bE01f.b 288 507 28 1.1
MGMY003CH12F.B mgmy003cH12f.b 34 512 28 1.1
MGMY003BH10F.B mgmy003bH10f.b 12 495 28 1.1
MGMY005BG10F.B mgmy005bG10f.b 47 334 26 4.2
MGMY005AE11F.B mgmy005aE11f.b 239 409 26 4.2
MGMY005AD10F.B mgmy005aD10f.b 159 479 26 4.2
MGMY004AB05F.B mgmy004aB05f.b 24 608 26 4.2
MGMY004AA04F.B mgmy004aA04f.b 26 654 26 4.2
MGMY003CE09F.B mgmy003cE09f.b 42 255 26 4.2
MGMY003BG03F.B mgmy003bG03f.b 28 563 26 4.2
MGMY002DD05F.B mgmy002dD05f.b 28 435 26 4.2
MGMY002DB11F.B mgmy002dB11f.b 4 340 26 4.2
MGMY002BG06F.B mgmy002bG06f.b 24 583 26 4.2
MGMY002AF02F.B mgmy002aF02f.b 29 510 26 4.2
MGMY002AD04F.B mgmy002aD04f.b 3 308 26 4.2
MGMY001CC03F.B mgmy001cC03f.b 18 431 26 4.2
MGMY001AC02F.B mgmy001aC02f.b 3 583 26 4.2
MGAP010DD06F.B mgap010dD06f.b 23 547 26 4.2
>MGMY006CG08F.B mgmy006cG08f.b 310 539
Length = 229
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 424 acgggtttggtaaa 437
||||||||||||||
Sbjct: 50 acgggtttggtaaa 37
>MGMY006BE01F.B mgmy006bE01f.b 288 507
Length = 219
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 317 cttcttgaggccac 330
||||||||||||||
Sbjct: 125 cttcttgaggccac 112
>MGMY003CH12F.B mgmy003cH12f.b 34 512
Length = 452
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 317 cttcttgaggccac 330
||||||||||||||
Sbjct: 355 cttcttgaggccac 342
>MGMY003BH10F.B mgmy003bH10f.b 12 495
Length = 416
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 317 cttcttgaggccac 330
||||||||||||||
Sbjct: 372 cttcttgaggccac 359
>MGMY005BG10F.B mgmy005bG10f.b 47 334
Length = 255
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 307 caaggaatttctt 319
|||||||||||||
Sbjct: 50 caaggaatttctt 62
>MGMY005AE11F.B mgmy005aE11f.b 239 409
Length = 170
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 tcgagaactgcca 114
|||||||||||||
Sbjct: 68 tcgagaactgcca 80
>MGMY005AD10F.B mgmy005aD10f.b 159 479
Length = 320
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 158 tgccttggactgt 170
|||||||||||||
Sbjct: 159 tgccttggactgt 147
>MGMY004AB05F.B mgmy004aB05f.b 24 608
Length = 533
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 53 gccgcaccagggc 65
|||||||||||||
Sbjct: 51 gccgcaccagggc 63
>MGMY004AA04F.B mgmy004aA04f.b 26 654
Length = 565
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 53 gccgcaccagggc 65
|||||||||||||
Sbjct: 525 gccgcaccagggc 537
>MGMY003CE09F.B mgmy003cE09f.b 42 255
Length = 213
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 tcgagaactgcca 114
|||||||||||||
Sbjct: 112 tcgagaactgcca 124
>MGMY003BG03F.B mgmy003bG03f.b 28 563
Length = 483
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 316 tcttcttgaggcc 328
|||||||||||||
Sbjct: 297 tcttcttgaggcc 309
>MGMY002DD05F.B mgmy002dD05f.b 28 435
Length = 364
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 tcgagaactgcca 114
|||||||||||||
Sbjct: 7 tcgagaactgcca 19
>MGMY002DB11F.B mgmy002dB11f.b 4 340
Length = 336
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 tcgagaactgcca 114
|||||||||||||
Sbjct: 21 tcgagaactgcca 33
>MGMY002BG06F.B mgmy002bG06f.b 24 583
Length = 446
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 tcgagaactgcca 114
|||||||||||||
Sbjct: 46 tcgagaactgcca 58
>MGMY002AF02F.B mgmy002aF02f.b 29 510
Length = 427
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 260 acgagccgagtat 272
|||||||||||||
Sbjct: 70 acgagccgagtat 82
>MGMY002AD04F.B mgmy002aD04f.b 3 308
Length = 305
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 215 atggttgaagaag 227
|||||||||||||
Sbjct: 93 atggttgaagaag 81
>MGMY001CC03F.B mgmy001cC03f.b 18 431
Length = 413
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 42 ctcgcggccaggc 54
|||||||||||||
Sbjct: 167 ctcgcggccaggc 155
>MGMY001AC02F.B mgmy001aC02f.b 3 583
Length = 537
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 215 atggttgaagaag 227
|||||||||||||
Sbjct: 15 atggttgaagaag 3
>MGAP010DD06F.B mgap010dD06f.b 23 547
Length = 472
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 20 tggcaacggagcc 32
|||||||||||||
Sbjct: 38 tggcaacggagcc 26
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196
Number of Sequences: 2061
Number of extensions: 196
Number of successful extensions: 51
Number of sequences better than 10.0: 19
length of query: 457
length of database: 785,635
effective HSP length: 14
effective length of query: 443
effective length of database: 756,781
effective search space: 335253983
effective search space used: 335253983
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)