BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1606_G01_M02ZS5
.seq
(463 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004CE10F.B mgmy004cE10f.b 54 423 30 0.27
MGMY004AG04F.B mgmy004aG04f.b 24 555 30 0.27
MGMY003AG10F.B mgmy003aG10f.b 8 369 30 0.27
MGAP008DD11F.B mgap008dD11f.b 15 632 30 0.27
MGAP007BB11F.B mgap007bB11f.b 23 589 30 0.27
MGMY005BE07F.B mgmy005bE07f.b 42 562 28 1.1
MGMY004AB06F.B mgmy004aB06f.b 24 557 28 1.1
MGMY003AB12F.B mgmy003aB12f.b 2 424 28 1.1
MGMY001AB05F.B mgmy001aB05f.b 4 549 28 1.1
MGMY006DE03F.B mgmy006dE03f.b 15 487 26 4.2
MGMY006CF01F.B mgmy006cF01f.b 47 434 26 4.2
MGMY005CF07F.B mgmy005cF07f.b 26 478 26 4.2
MGMY004DA03F.B mgmy004dA03f.b 46 328 26 4.2
MGMY004AA10F.B mgmy004aA10f.b 33 551 26 4.2
MGMY003DE10F.B mgmy003dE10f.b 86 484 26 4.2
MGMY003CG11F.B mgmy003cG11f.b 45 432 26 4.2
MGMY003CF06F.B mgmy003cF06f.b 42 369 26 4.2
MGMY002DD03F.B mgmy002dD03f.b 21 355 26 4.2
MGMY002BA12F.B mgmy002bA12f.b 15 655 26 4.2
MGMY001DG05F.B mgmy001dG05f.b 113 438 26 4.2
MGMY001DD12F.B mgmy001dD12f.b 116 465 26 4.2
MGAP010DH01F.B mgap010dH01f.b 134 519 26 4.2
MGAP010CH12F.B mgap010cH12f.b 117 599 26 4.2
MGAP007CG12F.B mgap007cG12f.b 153 557 26 4.2
MGAP007CC01F.B mgap007cC01f.b 17 504 26 4.2
>MGMY004CE10F.B mgmy004cE10f.b 54 423
Length = 369
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gagaaggctgcttac 192
|||||||||||||||
Sbjct: 354 gagaaggctgcttac 368
>MGMY004AG04F.B mgmy004aG04f.b 24 555
Length = 467
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 gagctcaacggcgtc 147
|||||||||||||||
Sbjct: 9 gagctcaacggcgtc 23
>MGMY003AG10F.B mgmy003aG10f.b 8 369
Length = 329
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 gagctcaacggcgtc 147
|||||||||||||||
Sbjct: 9 gagctcaacggcgtc 23
>MGAP008DD11F.B mgap008dD11f.b 15 632
Length = 551
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gagaaggctgcttac 192
|||||||||||||||
Sbjct: 358 gagaaggctgcttac 372
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 152 ccaaggctgctgc 164
|||||||||||||
Sbjct: 323 ccaaggctgctgc 335
>MGAP007BB11F.B mgap007bB11f.b 23 589
Length = 512
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gagaaggctgcttac 192
|||||||||||||||
Sbjct: 358 gagaaggctgcttac 372
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 152 ccaaggctgctgc 164
|||||||||||||
Sbjct: 323 ccaaggctgctgc 335
>MGMY005BE07F.B mgmy005bE07f.b 42 562
Length = 483
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 aagaccaaggctgc 161
||||||||||||||
Sbjct: 175 aagaccaaggctgc 188
>MGMY004AB06F.B mgmy004aB06f.b 24 557
Length = 469
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 caagaaattcttca 205
||||||||||||||
Sbjct: 190 caagaaattcttca 203
>MGMY003AB12F.B mgmy003aB12f.b 2 424
Length = 384
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 caagaaattcttca 205
||||||||||||||
Sbjct: 190 caagaaattcttca 203
>MGMY001AB05F.B mgmy001aB05f.b 4 549
Length = 441
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 aagaccaaggctgc 161
||||||||||||||
Sbjct: 325 aagaccaaggctgc 338
>MGMY006DE03F.B mgmy006dE03f.b 15 487
Length = 405
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 257 ttttttactcatc 269
|||||||||||||
Sbjct: 291 ttttttactcatc 279
>MGMY006CF01F.B mgmy006cF01f.b 47 434
Length = 374
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 4 ggacgccgaccgc 16
|||||||||||||
Sbjct: 80 ggacgccgaccgc 68
>MGMY005CF07F.B mgmy005cF07f.b 26 478
Length = 387
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 101 agctcgcgcccaa 113
|||||||||||||
Sbjct: 104 agctcgcgcccaa 116
>MGMY004DA03F.B mgmy004dA03f.b 46 328
Length = 262
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 390 aagcgggttacaa 402
|||||||||||||
Sbjct: 67 aagcgggttacaa 79
>MGMY004AA10F.B mgmy004aA10f.b 33 551
Length = 474
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 111 caacgatggcgcc 123
|||||||||||||
Sbjct: 461 caacgatggcgcc 473
>MGMY003DE10F.B mgmy003dE10f.b 86 484
Length = 389
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 171 tgccaaggagaag 183
|||||||||||||
Sbjct: 141 tgccaaggagaag 153
>MGMY003CG11F.B mgmy003cG11f.b 45 432
Length = 365
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 152 ccaaggctgctgc 164
|||||||||||||
Sbjct: 323 ccaaggctgctgc 335
>MGMY003CF06F.B mgmy003cF06f.b 42 369
Length = 303
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 180 gaaggctgcttac 192
|||||||||||||
Sbjct: 1 gaaggctgcttac 13
>MGMY002DD03F.B mgmy002dD03f.b 21 355
Length = 284
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 ccgaggccaacaa 101
|||||||||||||
Sbjct: 232 ccgaggccaacaa 244
>MGMY002BA12F.B mgmy002bA12f.b 15 655
Length = 579
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 152 ccaaggctgctgc 164
|||||||||||||
Sbjct: 253 ccaaggctgctgc 241
>MGMY001DG05F.B mgmy001dG05f.b 113 438
Length = 325
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 138 caacggcgtcaag 150
|||||||||||||
Sbjct: 187 caacggcgtcaag 199
>MGMY001DD12F.B mgmy001dD12f.b 116 465
Length = 349
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 172 gccaaggagaagg 184
|||||||||||||
Sbjct: 95 gccaaggagaagg 107
>MGAP010DH01F.B mgap010dH01f.b 134 519
Length = 385
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 270 atgagcggtatag 282
|||||||||||||
Sbjct: 157 atgagcggtatag 169
>MGAP010CH12F.B mgap010cH12f.b 117 599
Length = 482
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 cggtcttgccaac 48
|||||||||||||
Sbjct: 311 cggtcttgccaac 323
>MGAP007CG12F.B mgap007cG12f.b 153 557
Length = 361
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 134 agctcaacggcgt 146
|||||||||||||
Sbjct: 143 agctcaacggcgt 155
>MGAP007CC01F.B mgap007cC01f.b 17 504
Length = 419
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 18 caaagctttctac 30
|||||||||||||
Sbjct: 249 caaagctttctac 261
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 263
Number of Sequences: 2061
Number of extensions: 263
Number of successful extensions: 92
Number of sequences better than 10.0: 25
length of query: 463
length of database: 785,635
effective HSP length: 14
effective length of query: 449
effective length of database: 756,781
effective search space: 339794669
effective search space used: 339794669
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)