BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_A05_B09ZS5
.seq
(357 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003AG04F.B mgmy003aG04f.b 1 541 28 0.82
MGCM002CH04F.B mgcm002cH04f.b 22 540 28 0.82
MGMY005DH01F.B mgmy005dH01f.b 3 548 26 3.2
MGMY002DE05F.B mgmy002dE05f.b 28 255 26 3.2
MGMY002AH10F.B mgmy002aH10f.b 29 544 26 3.2
MGCM002AD03F.B mgcm002aD03f.b 18 505 26 3.2
MGCM001DA05F.B mgcm001dA05f.b 5 465 26 3.2
MGAP008CC08F.B mgap008cC08f.b 101 471 26 3.2
>MGMY003AG04F.B mgmy003aG04f.b 1 541
Length = 501
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 173 ttgaggttgacatgatgg 190
|||||| |||||||||||
Sbjct: 176 ttgaggatgacatgatgg 159
>MGCM002CH04F.B mgcm002cH04f.b 22 540
Length = 445
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 173 ttgaggttgacatgatgg 190
|||||| |||||||||||
Sbjct: 183 ttgaggatgacatgatgg 166
>MGMY005DH01F.B mgmy005dH01f.b 3 548
Length = 502
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 132 ggttgttgtggcg 144
|||||||||||||
Sbjct: 349 ggttgttgtggcg 337
>MGMY002DE05F.B mgmy002dE05f.b 28 255
Length = 197
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 74 aggtcaatgacca 86
|||||||||||||
Sbjct: 66 aggtcaatgacca 54
>MGMY002AH10F.B mgmy002aH10f.b 29 544
Length = 342
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 327 ggtttgattgcta 339
|||||||||||||
Sbjct: 171 ggtttgattgcta 183
>MGCM002AD03F.B mgcm002aD03f.b 18 505
Length = 421
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 148 aagaaggagggtg 160
|||||||||||||
Sbjct: 378 aagaaggagggtg 390
>MGCM001DA05F.B mgcm001dA05f.b 5 465
Length = 407
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 265 gagaagattgttg 277
|||||||||||||
Sbjct: 246 gagaagattgttg 234
>MGAP008CC08F.B mgap008cC08f.b 101 471
Length = 370
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 251 cttttcctttcat 263
|||||||||||||
Sbjct: 51 cttttcctttcat 63
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172
Number of Sequences: 2061
Number of extensions: 172
Number of successful extensions: 34
Number of sequences better than 10.0: 8
length of query: 357
length of database: 785,635
effective HSP length: 14
effective length of query: 343
effective length of database: 756,781
effective search space: 259575883
effective search space used: 259575883
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)