BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_A11_B21ZS5
.seq
(296 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY001AC02F.B mgmy001aC02f.b 3 583 28 0.67
MGMY005DA12F.B mgmy005dA12f.b 199 569 26 2.7
MGMY004DD05F.B mgmy004dD05f.b 37 338 26 2.7
MGMY002DD04F.B mgmy002dD04f.b 29 397 26 2.7
MGMY002BD08F.B mgmy002bD08f.b 17 497 26 2.7
MGMY002AB12F.B mgmy002aB12f.b 30 503 26 2.7
MGMY001AA05F.B mgmy001aA05f.b 163 735 26 2.7
MGCM002CA07F.B mgcm002cA07f.b 23 511 26 2.7
MGAP007BC08F.B mgap007bC08f.b 13 552 26 2.7
MGAP007AC08F.B mgap007aC08f.b 25 374 26 2.7
>MGMY001AC02F.B mgmy001aC02f.b 3 583
Length = 537
Score = 28.2 bits (14), Expect = 0.67
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 acataccaagaaca 125
||||||||||||||
Sbjct: 219 acataccaagaaca 232
>MGMY005DA12F.B mgmy005dA12f.b 199 569
Length = 357
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 277 cacattcacaatg 289
|||||||||||||
Sbjct: 23 cacattcacaatg 35
>MGMY004DD05F.B mgmy004dD05f.b 37 338
Length = 278
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 gaagcttgggtgg 179
|||||||||||||
Sbjct: 123 gaagcttgggtgg 111
>MGMY002DD04F.B mgmy002dD04f.b 29 397
Length = 325
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 277 cacattcacaatg 289
|||||||||||||
Sbjct: 39 cacattcacaatg 51
>MGMY002BD08F.B mgmy002bD08f.b 17 497
Length = 413
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 277 cacattcacaatg 289
|||||||||||||
Sbjct: 31 cacattcacaatg 43
>MGMY002AB12F.B mgmy002aB12f.b 30 503
Length = 415
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 277 cacattcacaatg 289
|||||||||||||
Sbjct: 45 cacattcacaatg 57
>MGMY001AA05F.B mgmy001aA05f.b 163 735
Length = 572
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 gaagcttgggtgg 179
|||||||||||||
Sbjct: 124 gaagcttgggtgg 112
>MGCM002CA07F.B mgcm002cA07f.b 23 511
Length = 417
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 29 ggcttggagggct 41
|||||||||||||
Sbjct: 254 ggcttggagggct 266
>MGAP007BC08F.B mgap007bC08f.b 13 552
Length = 484
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 230 gcatcgtgcccat 242
|||||||||||||
Sbjct: 283 gcatcgtgcccat 271
>MGAP007AC08F.B mgap007aC08f.b 25 374
Length = 297
Score = 26.3 bits (13), Expect = 2.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 230 gcatcgtgcccat 242
|||||||||||||
Sbjct: 275 gcatcgtgcccat 263
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76
Number of Sequences: 2061
Number of extensions: 76
Number of successful extensions: 29
Number of sequences better than 10.0: 10
length of query: 296
length of database: 785,635
effective HSP length: 13
effective length of query: 283
effective length of database: 758,842
effective search space: 214752286
effective search space used: 214752286
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)