BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_B02_D03ZS5
.seq
(91 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004AE04F.B mgmy004aE04f.b 24 577 24 2.9
MGMY003DA07F.B mgmy003dA07f.b 94 624 24 2.9
MGMY002DC02F.B mgmy002dC02f.b 27 410 24 2.9
MGCM002DG02F.B mgcm002dG02f.b 2 479 24 2.9
MGCM001DA06F.B mgcm001dA06f.b 1 411 24 2.9
>MGMY004AE04F.B mgmy004aE04f.b 24 577
Length = 489
Score = 24.3 bits (12), Expect = 2.9
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 3 tttagtttagta 14
||||||||||||
Sbjct: 422 tttagtttagta 411
>MGMY003DA07F.B mgmy003dA07f.b 94 624
Length = 530
Score = 24.3 bits (12), Expect = 2.9
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 28 cgctggagcgcc 39
||||||||||||
Sbjct: 188 cgctggagcgcc 199
>MGMY002DC02F.B mgmy002dC02f.b 27 410
Length = 339
Score = 24.3 bits (12), Expect = 2.9
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 16 tgagcaagtcgt 27
||||||||||||
Sbjct: 91 tgagcaagtcgt 80
>MGCM002DG02F.B mgcm002dG02f.b 2 479
Length = 413
Score = 24.3 bits (12), Expect = 2.9
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 16 tgagcaagtcgt 27
||||||||||||
Sbjct: 147 tgagcaagtcgt 136
>MGCM001DA06F.B mgcm001dA06f.b 1 411
Length = 358
Score = 24.3 bits (12), Expect = 2.9
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 27 tcgctggagcgc 38
||||||||||||
Sbjct: 97 tcgctggagcgc 86
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26
Number of Sequences: 2061
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 5
length of query: 91
length of database: 785,635
effective HSP length: 13
effective length of query: 78
effective length of database: 758,842
effective search space: 59189676
effective search space used: 59189676
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)