TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_B02_D03ZS5
.seq
(91 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGAP007CC08F.B mgap007cC08f.b 16 604 21 0.95
MGMY004AA10F.B mgmy004aA10f.b 33 551 20 1.3
MGMY002DE05F.B mgmy002dE05f.b 28 255 19 2.5
MGAP010CA06F.B mgap010cA06f.b 109 496 19 3.4
MGMY002CA01F.B mgmy002cA01f.b 28 403 18 4.6
MGAP008CC06F.B mgap008cC06f.b 25 560 18 4.6
MGCM002CA10F.B mgcm002cA10f.b 2 504 18 6.4
MGAP007BG09F.B mgap007bG09f.b 23 569 18 6.4
MGMY003AE10F.B mgmy003aE10f.b 2 526 18 6.4
MGAP010CH07F.B mgap010cH07f.b 108 522 18 6.4
MGMY006DG07F.B mgmy006dG07f.b 16 591 18 6.4
MGMY004DH07F.B mgmy004dH07f.b 42 444 18 6.4
MGCM002DG09F.B mgcm002dG09f.b 24 477 18 6.4
MGCM002DB04F.B mgcm002dB04f.b 0 493 18 6.4
MGMY006DF06F.B mgmy006dF06f.b 19 292 18 6.4
MGMY002CF08F.B mgmy002cF08f.b 28 524 18 6.4
MGMY003BH01F.B mgmy003bH01f.b 15 517 18 8.7
MGAP008DG05F.B mgap008dG05f.b 15 595 18 8.7
MGCM002DA01F.B mgcm002dA01f.b 0 480 18 8.7
MGMY003AH11F.B mgmy003aH11f.b 1 444 18 8.7
MGAP010DA09F.B mgap010dA09f.b 30 562 18 8.7
MGCM002AE03F.B mgcm002aE03f.b 5 419 18 8.7
>MGAP007CC08F.B mgap007cC08f.b 16 604
Length = 520
Score = 20.8 bits (39), Expect = 0.95
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3 / +3
Query: 65 NCQIISFQSALQRRLAHY 12
NC+ F LQR L H+
Sbjct: 390 NCRGAGFGLVLQRPLCHH 443
Score = 18.9 bits (35), Expect = 3.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 59 QIISFQSALQRRLAH 15
++ SFQSAL + H
Sbjct: 54 RVCSFQSALASLVXH 10
>MGMY004AA10F.B mgmy004aA10f.b 33 551
Length = 474
Score = 20.3 bits (38), Expect = 1.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1 / -2
Query: 70 RLTVKSFHFNRRSSDDL 20
RL VKS H S DL
Sbjct: 404 RLAVKSGHAVLESDQDL 354
>MGMY002DE05F.B mgmy002dE05f.b 28 255
Length = 197
Score = 19.4 bits (36), Expect = 2.5
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -1 / -3
Query: 70 RLTVKSFHFNRR 35
RLT+ HF+RR
Sbjct: 117 RLTLDCSHFSRR 82
>MGAP010CA06F.B mgap010cA06f.b 109 496
Length = 387
Score = 18.9 bits (35), Expect = 3.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 57 NHFISIGAPATTCSLLN 7
NHF+S+ A T S N
Sbjct: 48 NHFVSMSPSAITESPRN 98
>MGMY002CA01F.B mgmy002cA01f.b 28 403
Length = 323
Score = 18.5 bits (34), Expect = 4.6
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +1 / -3
Query: 40 D*NEMI*QLICNI 78
D*N + LICN+
Sbjct: 171 D*NHLSFSLICNL 133
>MGAP008CC06F.B mgap008cC06f.b 25 560
Length = 492
Score = 18.5 bits (34), Expect = 4.6
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -2 / -3
Query: 42 IGAPATTCS 16
+G+P +TCS
Sbjct: 292 LGSPRSTCS 266
>MGCM002CA10F.B mgcm002cA10f.b 2 504
Length = 438
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +2
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 218 KSFSSSRRSSPSSKLT 265
>MGAP007BG09F.B mgap007bG09f.b 23 569
Length = 494
Score = 18.0 bits (33), Expect = 6.4
Identities = 6/14 (42%), Positives = 8/14 (56%)
Frame = -3 / -2
Query: 56 IISFQSALQRRLAH 15
++ L RRLAH
Sbjct: 205 VVLSSCTLSRRLAH 164
>MGMY003AE10F.B mgmy003aE10f.b 2 526
Length = 486
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +1
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 217 KSFSSSRRSSPSSKLT 264
>MGAP010CH07F.B mgap010cH07f.b 108 522
Length = 414
Score = 18.0 bits (33), Expect = 6.4
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +1 / +3
Query: 19 ASRRW 33
ASRRW
Sbjct: 396 ASRRW 410
>MGMY006DG07F.B mgmy006dG07f.b 16 591
Length = 499
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +1
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 217 KSFSSSRRSSPSSKLT 264
>MGMY004DH07F.B mgmy004dH07f.b 42 444
Length = 395
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +1
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 271 KSFSSSRRSSPSSKLT 318
>MGCM002DG09F.B mgcm002dG09f.b 24 477
Length = 357
Score = 18.0 bits (33), Expect = 6.4
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -1 / -2
Query: 73 YRLTVKSFHFN 41
YRL + HFN
Sbjct: 224 YRLPLYDVHFN 192
>MGCM002DB04F.B mgcm002dB04f.b 0 493
Length = 449
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +3
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 279 KSFSSSRRSSPSSKLT 326
>MGMY006DF06F.B mgmy006dF06f.b 19 292
Length = 209
Score = 18.0 bits (33), Expect = 6.4
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = +1 / -3
Query: 22 SRRWSAD 42
SRRW++D
Sbjct: 66 SRRWASD 46
>MGMY002CF08F.B mgmy002cF08f.b 28 524
Length = 445
Score = 18.0 bits (33), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +1
Query: 58 KSFHFNRRSSDDLLIT 11
KSF +RRSS +T
Sbjct: 187 KSFSSSRRSSPSSKLT 234
>MGMY003BH01F.B mgmy003bH01f.b 15 517
Length = 451
Score = 17.6 bits (32), Expect = 8.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -2 / +3
Query: 45 SIGAPATTC 19
S AP+TTC
Sbjct: 330 SRAAPSTTC 356
>MGAP008DG05F.B mgap008dG05f.b 15 595
Length = 514
Score = 17.6 bits (32), Expect = 8.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3 / +3
Query: 6 SLVMSKSSL 32
SLV SKSSL
Sbjct: 129 SLVASKSSL 155
>MGCM002DA01F.B mgcm002dA01f.b 0 480
Length = 414
Score = 17.6 bits (32), Expect = 8.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1 / -3
Query: 46 FNRRSSDD 23
FN+RSS D
Sbjct: 205 FNKRSSGD 182
>MGMY003AH11F.B mgmy003aH11f.b 1 444
Length = 403
Score = 17.6 bits (32), Expect = 8.7
Identities = 5/15 (33%), Positives = 9/15 (59%)
Frame = -2 / -1
Query: 81 IDITD*LSNHFISIG 37
+D+T + H + IG
Sbjct: 295 LDVTVAVEAHLLDIG 251
>MGAP010DA09F.B mgap010dA09f.b 30 562
Length = 489
Score = 17.6 bits (32), Expect = 8.7
Identities = 5/11 (45%), Positives = 7/11 (63%)
Frame = -2 / +1
Query: 54 HFISIGAPATT 22
HFI + + TT
Sbjct: 283 HFIIMFSTLTT 315
>MGCM002AE03F.B mgcm002aE03f.b 5 419
Length = 361
Score = 17.6 bits (32), Expect = 8.7
Identities = 5/8 (62%), Positives = 6/8 (74%)
Frame = -1 / +3
Query: 91 HRANRYYR 68
HR RY+R
Sbjct: 333 HRCRRYHR 356
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 117192
Number of Sequences: 2061
Number of extensions: 358
Number of successful extensions: 85
Number of sequences better than 10.0: 25
length of query: 30
length of database: 261,878
effective HSP length: 22
effective length of query: 7
effective length of database: 216,536
effective search space: 1515752
effective search space used: 1515752
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 32 (17.6 bits)