BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_G04_N07ZS5
.seq
(331 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY005CD03F.B mgmy005cD03f.b 1 459 30 0.19
MGMY005CE03F.B mgmy005cE03f.b 23 483 26 3.0
>MGMY005CD03F.B mgmy005cD03f.b 1 459
Length = 402
Score = 30.2 bits (15), Expect = 0.19
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 catcgccctgcccaa 39
|||||||||||||||
Sbjct: 121 catcgccctgcccaa 135
>MGMY005CE03F.B mgmy005cE03f.b 23 483
Length = 407
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 212 ctccaaaagcgca 224
|||||||||||||
Sbjct: 341 ctccaaaagcgca 329
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91
Number of Sequences: 2061
Number of extensions: 91
Number of successful extensions: 9
Number of sequences better than 10.0: 2
length of query: 331
length of database: 785,635
effective HSP length: 13
effective length of query: 318
effective length of database: 758,842
effective search space: 241311756
effective search space used: 241311756
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)