BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_H04_P07ZS5
.seq
(110 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM002DB10F.B mgcm002dB10f.b 23 256 24 3.6
MGAP010DF02F.B mgap010dF02f.b 18 514 24 3.6
MGAP007BE12F.B mgap007bE12f.b 18 556 24 3.6
MGAP007BB07F.B mgap007bB07f.b 25 597 24 3.6
MGAP007BB05F.B mgap007bB05f.b 19 513 24 3.6
>MGCM002DB10F.B mgcm002dB10f.b 23 256
Length = 162
Score = 24.3 bits (12), Expect = 3.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 9 ttggccattgtc 20
||||||||||||
Sbjct: 90 ttggccattgtc 101
>MGAP010DF02F.B mgap010dF02f.b 18 514
Length = 443
Score = 24.3 bits (12), Expect = 3.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 43 gatactcaggag 54
||||||||||||
Sbjct: 19 gatactcaggag 8
>MGAP007BE12F.B mgap007bE12f.b 18 556
Length = 367
Score = 24.3 bits (12), Expect = 3.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 27 aaggagatatca 38
||||||||||||
Sbjct: 181 aaggagatatca 170
>MGAP007BB07F.B mgap007bB07f.b 25 597
Length = 519
Score = 24.3 bits (12), Expect = 3.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 21 gttgtgaaggag 32
||||||||||||
Sbjct: 103 gttgtgaaggag 92
>MGAP007BB05F.B mgap007bB05f.b 19 513
Length = 434
Score = 24.3 bits (12), Expect = 3.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 43 gatactcaggag 54
||||||||||||
Sbjct: 12 gatactcaggag 1
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20
Number of Sequences: 2061
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 5
length of query: 110
length of database: 785,635
effective HSP length: 13
effective length of query: 97
effective length of database: 758,842
effective search space: 73607674
effective search space used: 73607674
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)