BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1607_H10_P19ZS5
.seq
(338 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006CF10F.B mgmy006cF10f.b 167 291 26 3.1
MGMY006AF03F.B mgmy006aF03f.b 14 528 26 3.1
MGMY006AB06F.B mgmy006aB06f.b 26 454 26 3.1
MGMY005DD08F.B mgmy005dD08f.b 175 418 26 3.1
MGMY004DG05F.B mgmy004dG05f.b 31 172 26 3.1
MGMY004AF02F.B mgmy004aF02f.b 33 540 26 3.1
MGMY003BC02F.B mgmy003bC02f.b 15 551 26 3.1
MGMY003AA12F.B mgmy003aA12f.b 2 556 26 3.1
MGMY001AE08F.B mgmy001aE08f.b 156 490 26 3.1
MGCM002CG03F.B mgcm002cG03f.b 20 523 26 3.1
>MGMY006CF10F.B mgmy006cF10f.b 167 291
Length = 124
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 238 agcataccgttga 250
|||||||||||||
Sbjct: 25 agcataccgttga 37
>MGMY006AF03F.B mgmy006aF03f.b 14 528
Length = 446
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 127 atatgtctggcgg 115
>MGMY006AB06F.B mgmy006aB06f.b 26 454
Length = 384
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 177 gtctggcgggagt 189
|||||||||||||
Sbjct: 114 gtctggcgggagt 102
>MGMY005DD08F.B mgmy005dD08f.b 175 418
Length = 241
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 127 atatgtctggcgg 115
>MGMY004DG05F.B mgmy004dG05f.b 31 172
Length = 110
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 108 acactcaccaccg 120
|||||||||||||
Sbjct: 18 acactcaccaccg 30
>MGMY004AF02F.B mgmy004aF02f.b 33 540
Length = 451
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 117 atatgtctggcgg 105
>MGMY003BC02F.B mgmy003bC02f.b 15 551
Length = 472
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 129 atatgtctggcgg 117
>MGMY003AA12F.B mgmy003aA12f.b 2 556
Length = 529
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 115 atatgtctggcgg 103
>MGMY001AE08F.B mgmy001aE08f.b 156 490
Length = 296
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 124 atatgtctggcgg 112
>MGCM002CG03F.B mgcm002cG03f.b 20 523
Length = 432
Score = 26.3 bits (13), Expect = 3.1
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 248 tgacgacggcctggagg 264
||||| |||||||||||
Sbjct: 339 tgacggcggcctggagg 355
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112
Number of Sequences: 2061
Number of extensions: 112
Number of successful extensions: 31
Number of sequences better than 10.0: 10
length of query: 338
length of database: 785,635
effective HSP length: 13
effective length of query: 325
effective length of database: 758,842
effective search space: 246623650
effective search space used: 246623650
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)