BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1608_C10_F20ZS5
.seq
(557 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM002DD12F.B mgcm002dD12f.b 21 466 34 0.021
MGAP010DH01F.B mgap010dH01f.b 134 519 28 1.3
MGAP008DD09F.B mgap008dD09f.b 15 619 28 1.3
MGAP007CB06F.B mgap007cB06f.b 16 600 28 1.3
MGMY006DD02F.B mgmy006dD02f.b 21 531 26 5.1
MGMY006AG06F.B mgmy006aG06f.b 16 452 26 5.1
MGMY002DG12F.B mgmy002dG12f.b 19 635 26 5.1
MGMY002BE05F.B mgmy002bE05f.b 26 572 26 5.1
MGMY002BA06F.B mgmy002bA06f.b 22 550 26 5.1
MGCM002DA01F.B mgcm002dA01f.b 0 480 26 5.1
MGCM001DH03F.B mgcm001dH03f.b 21 437 26 5.1
MGAP008BB01F.B mgap008bB01f.b 28 431 26 5.1
MGAP007BG02F.B mgap007bG02f.b 33 478 26 5.1
MGAP007BD11F.B mgap007bD11f.b 15 541 26 5.1
MGAP007AC11F.B mgap007aC11f.b 121 546 26 5.1
>MGCM002DD12F.B mgcm002dD12f.b 21 466
Length = 374
Score = 34.2 bits (17), Expect = 0.021
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12 ggcaaagaaggccgagg 28
|||||||||||||||||
Sbjct: 267 ggcaaagaaggccgagg 283
>MGAP010DH01F.B mgap010dH01f.b 134 519
Length = 385
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 402 tgataccaaccaca 415
||||||||||||||
Sbjct: 90 tgataccaaccaca 103
>MGAP008DD09F.B mgap008dD09f.b 15 619
Length = 536
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cagcagctatcgac 219
||||||||||||||
Sbjct: 312 cagcagctatcgac 299
>MGAP007CB06F.B mgap007cB06f.b 16 600
Length = 517
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 334 gagaaagaccatga 347
||||||||||||||
Sbjct: 483 gagaaagaccatga 496
>MGMY006DD02F.B mgmy006dD02f.b 21 531
Length = 459
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 19 aaggccgaggaaa 31
|||||||||||||
Sbjct: 186 aaggccgaggaaa 198
>MGMY006AG06F.B mgmy006aG06f.b 16 452
Length = 368
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 gccattgacgacg 127
|||||||||||||
Sbjct: 243 gccattgacgacg 255
>MGMY002DG12F.B mgmy002dG12f.b 19 635
Length = 577
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 362 agagaagaagctt 374
|||||||||||||
Sbjct: 56 agagaagaagctt 44
>MGMY002BE05F.B mgmy002bE05f.b 26 572
Length = 491
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 gccattgacgacg 127
|||||||||||||
Sbjct: 271 gccattgacgacg 283
>MGMY002BA06F.B mgmy002bA06f.b 22 550
Length = 464
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 gccattgacgacg 127
|||||||||||||
Sbjct: 364 gccattgacgacg 376
>MGCM002DA01F.B mgcm002dA01f.b 0 480
Length = 414
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 241 aggggtcgaagaa 253
|||||||||||||
Sbjct: 150 aggggtcgaagaa 138
>MGCM001DH03F.B mgcm001dH03f.b 21 437
Length = 349
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 518 cacgtggtgtgag 530
|||||||||||||
Sbjct: 186 cacgtggtgtgag 174
>MGAP008BB01F.B mgap008bB01f.b 28 431
Length = 360
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 gccattgacgacg 127
|||||||||||||
Sbjct: 92 gccattgacgacg 104
>MGAP007BG02F.B mgap007bG02f.b 33 478
Length = 412
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 267 ggcatcaccaacc 279
|||||||||||||
Sbjct: 397 ggcatcaccaacc 385
>MGAP007BD11F.B mgap007bD11f.b 15 541
Length = 478
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 362 agagaagaagctt 374
|||||||||||||
Sbjct: 160 agagaagaagctt 148
>MGAP007AC11F.B mgap007aC11f.b 121 546
Length = 390
Score = 26.3 bits (13), Expect = 5.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 132 aagcactcgaagt 144
|||||||||||||
Sbjct: 247 aagcactcgaagt 235
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318
Number of Sequences: 2061
Number of extensions: 318
Number of successful extensions: 69
Number of sequences better than 10.0: 15
length of query: 557
length of database: 785,635
effective HSP length: 14
effective length of query: 543
effective length of database: 756,781
effective search space: 410932083
effective search space used: 410932083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)