BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1608_F08_L16ZS5
.seq
(260 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY002DG05F.B mgmy002dG05f.b 1 278 34 0.010
MGCM002DD08F.B mgcm002dD08f.b 2 483 34 0.010
MGAP007CF07F.B mgap007cF07f.b 16 535 34 0.010
MGMY001AH02F.B mgmy001aH02f.b 154 595 28 0.59
MGCM002CC11F.B mgcm002cC11f.b 2 436 28 0.59
MGMY006AC10F.B mgmy006aC10f.b 19 322 26 2.3
MGMY005BF03F.B mgmy005bF03f.b 5 380 26 2.3
MGMY004CE02F.B mgmy004cE02f.b 46 413 26 2.3
MGCM002CE11F.B mgcm002cE11f.b 22 401 26 2.3
MGAP010DF02F.B mgap010dF02f.b 18 514 26 2.3
MGAP010CG10F.B mgap010cG10f.b 37 558 26 2.3
MGAP008BG02F.B mgap008bG02f.b 23 461 26 2.3
MGAP007CF02F.B mgap007cF02f.b 114 646 26 2.3
MGAP007BE06F.B mgap007bE06f.b 23 530 26 2.3
MGAP007BB05F.B mgap007bB05f.b 19 513 26 2.3
MGMY006DF08F.B mgmy006dF08f.b 16 551 24 9.2
MGMY006CD08F.B mgmy006cD08f.b 40 379 24 9.2
MGMY006AC04F.B mgmy006aC04f.b 19 522 24 9.2
MGMY006AB09F.B mgmy006aB09f.b 17 471 24 9.2
MGMY005DF06F.B mgmy005dF06f.b 2 296 24 9.2
MGMY005CF02F.B mgmy005cF02f.b 29 436 24 9.2
MGMY005AD10F.B mgmy005aD10f.b 159 479 24 9.2
MGMY004DF05F.B mgmy004dF05f.b 40 266 24 9.2
MGMY003CG02F.B mgmy003cG02f.b 39 422 24 9.2
MGMY002AH05F.B mgmy002aH05f.b 33 600 24 9.2
MGMY002AB03F.B mgmy002aB03f.b 27 593 24 9.2
MGMY001BA08F.B mgmy001bA08f.b 30 330 24 9.2
MGMY001AF10F.B mgmy001aF10f.b 6 626 24 9.2
MGAP008CC11F.B mgap008cC11f.b 25 453 24 9.2
MGAP007CB04F.B mgap007cB04f.b 17 520 24 9.2
MGAP007BE01F.B mgap007bE01f.b 32 544 24 9.2
>MGMY002DG05F.B mgmy002dG05f.b 1 278
Length = 277
Score = 34.2 bits (17), Expect = 0.010
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 220 gaccctagatcagtcaaaatg 240
||||||| |||||||||||||
Sbjct: 64 gaccctaaatcagtcaaaatg 84
>MGCM002DD08F.B mgcm002dD08f.b 2 483
Length = 420
Score = 34.2 bits (17), Expect = 0.010
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 220 gaccctagatcagtcaaaatg 240
||||||| |||||||||||||
Sbjct: 134 gaccctaaatcagtcaaaatg 154
>MGAP007CF07F.B mgap007cF07f.b 16 535
Length = 451
Score = 34.2 bits (17), Expect = 0.010
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 220 gaccctagatcagtcaaaatg 240
||||||| |||||||||||||
Sbjct: 129 gaccctaaatcagtcaaaatg 149
>MGMY001AH02F.B mgmy001aH02f.b 154 595
Length = 416
Score = 28.2 bits (14), Expect = 0.59
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatgg 241
||||||||||||||
Sbjct: 25 atcagtcaaaatgg 38
>MGCM002CC11F.B mgcm002cC11f.b 2 436
Length = 370
Score = 28.2 bits (14), Expect = 0.59
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatgg 241
||||||||||||||
Sbjct: 13 atcagtcaaaatgg 26
>MGMY006AC10F.B mgmy006aC10f.b 19 322
Length = 239
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 60 atcagtcaaaatg 72
>MGMY005BF03F.B mgmy005bF03f.b 5 380
Length = 342
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 70 atcagtcaaaatg 82
>MGMY004CE02F.B mgmy004cE02f.b 46 413
Length = 367
Score = 26.3 bits (13), Expect = 2.3
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 232 gtcaaaatggttaaagc 248
||||||||||| |||||
Sbjct: 13 gtcaaaatggtcaaagc 29
>MGCM002CE11F.B mgcm002cE11f.b 22 401
Length = 308
Score = 26.3 bits (13), Expect = 2.3
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 156 gcactctgaaccggggt 172
|||| ||||||||||||
Sbjct: 198 gcaccctgaaccggggt 182
>MGAP010DF02F.B mgap010dF02f.b 18 514
Length = 443
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 144 atcagtcaaaatg 156
>MGAP010CG10F.B mgap010cG10f.b 37 558
Length = 488
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 110 atcagtcaaaatg 122
>MGAP008BG02F.B mgap008bG02f.b 23 461
Length = 395
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 128 atcagtcaaaatg 140
>MGAP007CF02F.B mgap007cF02f.b 114 646
Length = 532
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 4 tgggcggatcggt 16
|||||||||||||
Sbjct: 318 tgggcggatcggt 306
>MGAP007BE06F.B mgap007bE06f.b 23 530
Length = 455
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 198 tgctaggaggatc 210
|||||||||||||
Sbjct: 289 tgctaggaggatc 301
>MGAP007BB05F.B mgap007bB05f.b 19 513
Length = 434
Score = 26.3 bits (13), Expect = 2.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 137 atcagtcaaaatg 149
>MGMY006DF08F.B mgmy006dF08f.b 16 551
Length = 385
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 17 cagtcaaaatgg 28
>MGMY006CD08F.B mgmy006cD08f.b 40 379
Length = 319
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 32 cagtcaaaatgg 43
>MGMY006AC04F.B mgmy006aC04f.b 19 522
Length = 439
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 32 cagtcaaaatgg 43
>MGMY006AB09F.B mgmy006aB09f.b 17 471
Length = 388
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 57 gggttggggttc 68
||||||||||||
Sbjct: 218 gggttggggttc 207
>MGMY005DF06F.B mgmy005dF06f.b 2 296
Length = 251
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 226 agatcagtcaaa 237
||||||||||||
Sbjct: 209 agatcagtcaaa 220
>MGMY005CF02F.B mgmy005cF02f.b 29 436
Length = 344
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 42 cagtcaaaatgg 53
>MGMY005AD10F.B mgmy005aD10f.b 159 479
Length = 320
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 138 cctcaatcgtct 149
||||||||||||
Sbjct: 99 cctcaatcgtct 88
>MGMY004DF05F.B mgmy004dF05f.b 40 266
Length = 205
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 57 gggttggggttc 68
||||||||||||
Sbjct: 110 gggttggggttc 99
>MGMY003CG02F.B mgmy003cG02f.b 39 422
Length = 361
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 1 cactgggcggat 12
||||||||||||
Sbjct: 140 cactgggcggat 129
>MGMY002AH05F.B mgmy002aH05f.b 33 600
Length = 521
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 33 cagtcaaaatgg 44
>MGMY002AB03F.B mgmy002aB03f.b 27 593
Length = 511
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 158 actctgaaccgg 169
||||||||||||
Sbjct: 76 actctgaaccgg 65
>MGMY001BA08F.B mgmy001bA08f.b 30 330
Length = 267
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 27 cagtcaaaatgg 38
>MGMY001AF10F.B mgmy001aF10f.b 6 626
Length = 568
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatgg 241
||||||||||||
Sbjct: 279 cagtcaaaatgg 290
>MGAP008CC11F.B mgap008cC11f.b 25 453
Length = 395
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 56 cgggttggggtt 67
||||||||||||
Sbjct: 206 cgggttggggtt 217
>MGAP007CB04F.B mgap007cB04f.b 17 520
Length = 436
Score = 24.3 bits (12), Expect = 9.2
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 gttggggttcgg 70
||||||||||||
Sbjct: 179 gttggggttcgg 168
>MGAP007BE01F.B mgap007bE01f.b 32 544
Length = 479
Score = 24.3 bits (12), Expect = 9.2
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 208 atcgagtttggagacc 223
||||||||||| ||||
Sbjct: 6 atcgagtttggggacc 21
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74
Number of Sequences: 2061
Number of extensions: 74
Number of successful extensions: 32
Number of sequences better than 10.0: 32
length of query: 260
length of database: 785,635
effective HSP length: 13
effective length of query: 247
effective length of database: 758,842
effective search space: 187433974
effective search space used: 187433974
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)