BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_C10_E19ZT.
seq
(440 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY002BH10F.B mgmy002bH10f.b 192 586 30 0.26
MGMY006DH03F.B mgmy006dH03f.b 17 555 26 4.0
MGMY006DG06F.B mgmy006dG06f.b 20 545 26 4.0
MGMY004AF11F.B mgmy004aF11f.b 30 544 26 4.0
MGMY001BF05F.B mgmy001bF05f.b 0 289 26 4.0
MGAP010CB10F.B mgap010cB10f.b 108 495 26 4.0
MGAP007CH12F.B mgap007cH12f.b 17 597 26 4.0
MGAP007CE11F.B mgap007cE11f.b 32 681 26 4.0
MGAP007AB10F.B mgap007aB10f.b 17 538 26 4.0
>MGMY002BH10F.B mgmy002bH10f.b 192 586
Length = 394
Score = 30.2 bits (15), Expect = 0.26
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 atcaagaaccaccat 210
|||||||||||||||
Sbjct: 15 atcaagaaccaccat 29
>MGMY006DH03F.B mgmy006dH03f.b 17 555
Length = 473
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 377 gggaccaaagttg 389
|||||||||||||
Sbjct: 186 gggaccaaagttg 174
>MGMY006DG06F.B mgmy006dG06f.b 20 545
Length = 460
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 377 gggaccaaagttg 389
|||||||||||||
Sbjct: 186 gggaccaaagttg 174
>MGMY004AF11F.B mgmy004aF11f.b 30 544
Length = 458
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 129 gcagttcaagttc 141
|||||||||||||
Sbjct: 390 gcagttcaagttc 402
>MGMY001BF05F.B mgmy001bF05f.b 0 289
Length = 289
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 292 gccatggctgcgc 304
|||||||||||||
Sbjct: 160 gccatggctgcgc 148
>MGAP010CB10F.B mgap010cB10f.b 108 495
Length = 387
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 292 gccatggctgcgc 304
|||||||||||||
Sbjct: 74 gccatggctgcgc 62
>MGAP007CH12F.B mgap007cH12f.b 17 597
Length = 513
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 291 tgccatggctgcg 303
|||||||||||||
Sbjct: 442 tgccatggctgcg 454
>MGAP007CE11F.B mgap007cE11f.b 32 681
Length = 596
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 329 taggcgagctacc 341
|||||||||||||
Sbjct: 439 taggcgagctacc 427
>MGAP007AB10F.B mgap007aB10f.b 17 538
Length = 460
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 292 gccatggctgcgc 304
|||||||||||||
Sbjct: 147 gccatggctgcgc 135
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192
Number of Sequences: 2061
Number of extensions: 192
Number of successful extensions: 39
Number of sequences better than 10.0: 9
length of query: 440
length of database: 785,635
effective HSP length: 14
effective length of query: 426
effective length of database: 756,781
effective search space: 322388706
effective search space used: 322388706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)